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Hi:
I tried to use pysam to extract the alignment informations(like base-quality,cigar) of specific reads(about a million reads)
Therefore, I have tried to fetch each read(by read_id) of BAM files in a single process environment.
The time consumption is not satisfactory.
Is there a high performance method to extraction alignment information of many reads?
The text was updated successfully, but these errors were encountered:
Hi:
I tried to use pysam to extract the alignment informations(like base-quality,cigar) of specific reads(about a million reads)
Therefore, I have tried to fetch each read(by read_id) of BAM files in a single process environment.
The time consumption is not satisfactory.
Is there a high performance method to extraction alignment information of many reads?
The text was updated successfully, but these errors were encountered: