Hi:
I tried to use pysam to extract the alignment informations(like base-quality,cigar) of specific reads(about a million reads)
Therefore, I have tried to fetch each read(by read_id) of BAM files in a single process environment.
The time consumption is not satisfactory.
Is there a high performance method to extraction alignment information of many reads?
Hi:
I tried to use pysam to extract the alignment informations(like base-quality,cigar) of specific reads(about a million reads)
Therefore, I have tried to fetch each read(by read_id) of BAM files in a single process environment.
The time consumption is not satisfactory.
Is there a high performance method to extraction alignment information of many reads?