Python framework for Systems Biology modeling
Python Other
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
doc
pysb
scripts
vm
.gitattributes
.gitignore
.travis.yml
Dockerfile
LICENSE.txt
MANIFEST.in
README.rst
ez_setup.py
setup.cfg
setup.py
versioneer.py

README.rst

PySB

Join the chat at https://gitter.im/pysb/pysb https://api.travis-ci.org/pysb/pysb.png

Python Systems Biology modeling framework

http://pysb.org/

PySB (pronounced "Pie Ess Bee") is a framework for building rule-based mathematical models of biochemical systems. It works nicely with scientific Python libraries such as NumPy, SciPy and SymPy for model simulation and analysis.

Installation

PySB depends on the following:

For full instructions, see the Installation chapter of the manual at http://docs.pysb.org/en/latest/installation.html

Documentation

The manual is available online at http://docs.pysb.org/. You can also generate the documentation locally by installing Sphinx and running the following commands:

$ cd doc
$ make html

Then open _build/html/index.html in your web browser.