Python framework for Systems Biology modeling
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alubbock Validate cupsoda init kwargs and integrator opts (#383)
* Validate cupsoda init kwargs and integrator opts

Previously, unrecognised kwargs and integrator options were
silently ignored. Now a ValueError is raised if they are not

* Fix cupsoda unit test
Latest commit d8ad0ae Oct 18, 2018



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Python Systems Biology modeling framework

PySB (pronounced "Pie Ess Bee") is a framework for building rule-based mathematical models of biochemical systems. It works nicely with scientific Python libraries such as NumPy, SciPy and SymPy for model simulation and analysis.


PySB depends on the following:

For full instructions, see the Installation chapter of the manual at


The manual is available online at You can also generate the documentation locally by installing Sphinx and running the following commands:

$ cd doc
$ make html

Then open _build/html/index.html in your web browser.