Python framework for Systems Biology modeling
Python Other
Latest commit 4164f37 Feb 2, 2017 @alubbock alubbock committed with jmuhlich Fix BNGL, SBML importers and unit tests on Windows (#240)
* BNGL importer now supports Windows (uses BngFileInterface, not BngConsole)

* Skip BngConsole unit test on Windows

* Switch test_importers to use BngFileInterface for Windows support
Permalink
Failed to load latest commit information.
doc
pysb
scripts
vm
.gitattributes
.gitignore
.travis.yml BioNetGen .bngl model file import for PySB (#206) Oct 6, 2016
Dockerfile
LICENSE.txt preparation for pypi release Apr 6, 2012
MANIFEST.in
README.rst
ez_setup.py Switch setup.py to setuptools Sep 29, 2015
setup.cfg
setup.py
versioneer.py

README.rst

PySB

Join the chat at https://gitter.im/pysb/pysb

https://api.travis-ci.org/pysb/pysb.png

Python Systems Biology modeling framework

http://pysb.org/

PySB (pronounced "Pie Ess Bee") is a framework for building rule-based mathematical models of biochemical systems. It works nicely with scientific Python libraries such as NumPy, SciPy and SymPy for model simulation and analysis.

Installation

PySB depends on the following:

For full instructions, see the Installation chapter of the manual at http://docs.pysb.org/en/latest/installation.html

Documentation

The manual is available online at http://docs.pysb.org/. You can also generate the documentation locally by installing Sphinx and running the following commands:

$ cd doc
$ make html

Then open _build/html/index.html in your web browser.