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Python framework for Systems Biology modeling

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as_complex_pattern converts Monomers

This prevents all constructors that depend on as_reaction_pattern
or as_complex_pattern to take MonomerPattern from throwing an error
when given a Monomer instead.

In particular, this resolves issue number #88, in which the Observable
constructor would error when a Monomer was used instead of a
MonomerPattern.
latest commit 725ceec703
johnbachman johnbachman authored April 21, 2014
Octocat-spinner-32 doc
Octocat-spinner-32 pysb
Octocat-spinner-32 scripts
Octocat-spinner-32 vm post-0.1.9 updates to vm and docs January 02, 2013
Octocat-spinner-32 .gitignore
Octocat-spinner-32 LICENSE.txt
Octocat-spinner-32 MANIFEST.in
Octocat-spinner-32 README.rst
Octocat-spinner-32 setup.py
README.rst

PySB

Python Systems Biology modeling framework

http://pysb.org/

PySB (pronounced "Pie Ess Bee") is a framework for building rule-based mathematical models of biochemical systems. It works nicely with scientific Python libraries such as NumPy, SciPy and SymPy for model simulation and analysis.

Installation

PySB depends on the following:

For full instructions, see the Installation chapter of the manual.

Documentation

The manual is available online at http://docs.pysb.org/. You can also generate the documentation locally by installing Sphinx and running the following commands:

$ cd doc
$ make html

Then open _build/html/index.html in your web browser.

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