Skip to content
Python framework for Systems Biology modeling
Python Other
Find file
Latest commit cc2826d @jmuhlich jmuhlich Merge pull request #187 from alubbock/integrate_regex
Support for parameters with s(\d+) in name; fixes #185



Python Systems Biology modeling framework

PySB (pronounced "Pie Ess Bee") is a framework for building rule-based mathematical models of biochemical systems. It works nicely with scientific Python libraries such as NumPy, SciPy and SymPy for model simulation and analysis.


PySB depends on the following:

For full instructions, see the Installation chapter of the manual.


The manual is available online at You can also generate the documentation locally by installing Sphinx and running the following commands:

$ cd doc
$ make html

Then open _build/html/index.html in your web browser.

Something went wrong with that request. Please try again.