Skip to content
Python framework for Systems Biology modeling
Python Other
Latest commit 1eee9ca Jun 30, 2016 @jmuhlich jmuhlich committed on GitHub Merge pull request #224 from johnbachman/with_model_self_export
Reset SelfExporter state after calling with_model
Failed to load latest commit information.
doc Fix problems with ReadTheDocs build Jun 24, 2016
pysb Reset SelfExporter state after calling with_model Jun 30, 2016
scripts py3: Convert to print_function Jul 26, 2015
vm
.gitattributes
.gitignore
.travis.yml
Dockerfile
LICENSE.txt preparation for pypi release Apr 6, 2012
MANIFEST.in
README.rst
ez_setup.py
setup.cfg
setup.py Add BNGFileInterface, in addition to BNGConsole Oct 1, 2015
versioneer.py Add versioneer to generate our version string Sep 30, 2015

README.rst

PySB

Join the chat at https://gitter.im/pysb/pysb https://api.travis-ci.org/pysb/pysb.png

Python Systems Biology modeling framework

http://pysb.org/

PySB (pronounced "Pie Ess Bee") is a framework for building rule-based mathematical models of biochemical systems. It works nicely with scientific Python libraries such as NumPy, SciPy and SymPy for model simulation and analysis.

Installation

PySB depends on the following:

For full instructions, see the Installation chapter of the manual.

Documentation

The manual is available online at http://docs.pysb.org/. You can also generate the documentation locally by installing Sphinx and running the following commands:

$ cd doc
$ make html

Then open _build/html/index.html in your web browser.

Something went wrong with that request. Please try again.