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from ez_setup import use_setuptools
use_setuptools()
from setuptools import setup
import versioneer
def main():
cmdclass = versioneer.get_cmdclass()
setup(name='pysb',
version=versioneer.get_version(),
description='Python Systems Biology modeling framework',
long_description='PySB (pronounced "Pie Ess Bee") is a framework ' + \
'for building rule-based mathematical models of biochemical ' + \
'systems. It works nicely with scientific Python libraries ' + \
'such as NumPy, SciPy and SymPy for model simulation and ' + \
'analysis.',
author='Jeremy Muhlich',
author_email='jmuhlich@bitflood.org',
url='http://pysb.org/',
packages=['pysb', 'pysb.generator', 'pysb.importers', 'pysb.tools',
'pysb.examples', 'pysb.export', 'pysb.simulator',
'pysb.testing', 'pysb.tests'],
scripts=['scripts/pysb_export'],
# We should really specify some minimum versions here.
install_requires=['numpy', 'scipy', 'sympy', 'networkx'],
setup_requires=['nose'],
tests_require=['coverage', 'pygraphviz', 'matplotlib', 'pexpect',
'pandas', 'theano', 'h5py', 'mock', 'cython',
'libsbml', 'roadrunner'],
cmdclass=cmdclass,
keywords=['systems', 'biology', 'model', 'rules'],
classifiers=[
'Development Status :: 5 - Production/Stable',
'Environment :: Console',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: BSD License',
'Operating System :: OS Independent',
'Programming Language :: Python :: 2',
'Programming Language :: Python :: 3',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Topic :: Scientific/Engineering :: Chemistry',
'Topic :: Scientific/Engineering :: Mathematics',
],
)
if __name__ == '__main__':
main()