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54 Open 189 Closed
54 Open 189 Closed
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State mapping in reaction rules?
#501 opened May 11, 2020 by dweindl
8
Incorrect binding with `catalyze_complex` macro on dimer substrate bug
#498 opened Apr 8, 2020 by alubbock
Undeclared dependencies can slip through testing
#497 opened Apr 3, 2020 by jmuhlich
dateutil.parser import at top level, but python-dateutil not in requirements
#496 opened Apr 3, 2020 by jmuhlich
Python version support policy
#463 opened Sep 23, 2019 by jmuhlich
2
Allows exporting to kappa when rules refer to only one compartment
#461 opened Sep 12, 2019 by glucksfall
1
error importing SBML model
#455 opened Aug 9, 2019 by glucksfall
1 3
feature request: species name in SimulationResult.all()
#449 opened May 21, 2019 by hungyiwu
2
Documentation: update tutorial with Simulator examples documentation
#442 opened Apr 24, 2019 by alubbock
Proposal: remove run_ssa function in PySB 2.0
#441 opened Apr 24, 2019 by alubbock v2.0.0
3
Proposal: move generator/ code to export/
#440 opened Apr 24, 2019 by alubbock v2.0.0
Proposal: remove pysb.experimental in PySB 2.0
#439 opened Apr 24, 2019 by alubbock v2.0.0
Proposal: remove pysb.deprecated in PySB 2.0
#438 opened Apr 24, 2019 by alubbock v2.0.0
Proposal: remove pysb.integrate in PySB 2.0
#437 opened Apr 24, 2019 by alubbock v2.0.0
Combining two models with duplicate Monomer names
#425 opened Mar 21, 2019 by jadeshi
1
End of Python 2.7 support
#414 opened Feb 5, 2019 by alubbock v2.0.0
3
Fix assumptions that initial condition values are always Parameters
#400 opened Jan 5, 2019 by jmuhlich
Incongruity between kappa.run_simulation() and bng.run_ssa() outputs
#343 opened Feb 13, 2018 by glucksfall
3
matlab exporter doesn't handle Expressions
#228 opened Sep 7, 2016 by jmuhlich
Diagram generation with rate expressions
#199 opened Apr 4, 2016 by bgyori
2
pysb_flat exporter should wrap to 80 columns where possible
#186 opened Dec 8, 2015 by jmuhlich
@jmuhlich
Write tests for fixes in #175 and #176 testing
#177 opened Nov 4, 2015 by jmuhlich
@jmuhlich
michaelis-menten example model
#145 opened Sep 4, 2015 by jmuhlich v1.1.1
1
move generator/bng.py content into bng.py
#144 opened Sep 4, 2015 by jmuhlich v2.0.0
1
in tyson_oscillator.py, switch parameter expressions to proper Expressions
#143 opened Sep 4, 2015 by jmuhlich v2.0.0
2
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