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67 Open 193 Closed
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Issues list

Problems with reactions where two monomers form another monomer VS two monomers form a dimer
#561 opened Jul 14, 2022 by Quim98
Model component concentration as an explicit function
#556 opened Dec 2, 2021 by melkonyan
1
Rule-based modeling with energy descriptions
#552 opened Nov 4, 2021 by himoto
4
top-level export function does not accept extra exporter-specific kwargs
#547 opened Jun 13, 2021 by jmuhlich
Annotation repr should reference Components by name
#535 opened Feb 11, 2021 by jmuhlich
Add support for explicit time in expressions feature
#534 opened Jan 20, 2021 by jmuhlich
pysb.importers.sbml.model_from_sbml returns error when loading SBML bug
#533 opened Jan 19, 2021 by devonjkohler
1
use threadpoolctl to manage openblas/mkl threading
#532 opened Jan 13, 2021 by jmuhlich
Expressions issue
#522 opened Oct 27, 2020 by Princeofthebow
5
ScipyOdeSimulator ignores use_analytic_jacobian (regression)
#519 opened Sep 30, 2020 by jmuhlich
1
Switch to tox for running tests
#517 opened Sep 17, 2020 by jmuhlich
"CupSodaSimulator doesn't support model with expression" error.
#515 opened Aug 13, 2020 by lmriccardo
6
change to_matrix() to to_numpy() in pysb/simulator/cupsoda.py
#514 opened Aug 11, 2020 by glucksfall
State mapping in reaction rules?
#501 opened May 11, 2020 by dweindl
8
Incorrect binding with catalyze_complex macro on dimer substrate bug
#498 opened Apr 8, 2020 by alubbock
Undeclared dependencies can slip through testing
#497 opened Apr 3, 2020 by jmuhlich
dateutil.parser import at top level, but python-dateutil not in requirements
#496 opened Apr 3, 2020 by jmuhlich
Python version support policy
#463 opened Sep 23, 2019 by jmuhlich
2
Allows exporting to kappa when rules refer to only one compartment
#461 opened Sep 12, 2019 by glucksfall
1
error importing SBML model
#455 opened Aug 9, 2019 by glucksfall
1
3
feature request: species name in SimulationResult.all()
#449 opened May 21, 2019 by hungyiwu
2
Documentation: update tutorial with Simulator examples documentation
#442 opened Apr 24, 2019 by alubbock
Proposal: remove run_ssa function in PySB 2.0
#441 opened Apr 24, 2019 by alubbock v2.0.0
3
Proposal: move generator/ code to export/
#440 opened Apr 24, 2019 by alubbock v2.0.0
Proposal: remove pysb.experimental in PySB 2.0
#439 opened Apr 24, 2019 by alubbock v2.0.0
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