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Duplicate sites support #410

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merged 10 commits into from May 10, 2019
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Merge branch 'master' into duplicate_sites

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alubbock committed Apr 25, 2019
commit 9cc3cba4c5f2b082e5fb1038a3ce5f13790f8d68
@@ -423,3 +423,46 @@ def test_duplicate_sites():
@raises(ValueError)
def test_duplicate_site_single_site():
MultiState('a')


@with_model
def test_invalid_rule():
Monomer('A')
assert_raises(ExpressionError, Rule, 'r1', None >> A(), 1.0)
assert len(model.rules) == 0

Parameter('kf', 1.0)
assert_raises(Exception, Rule, 'r1', 'invalid_rule_expr', kf)
assert len(model.rules) == 0


@with_model
def test_invalid_expression():
assert_raises(ValueError, Expression, 'e1', 'invalid_expr')
assert len(model.expressions) == 0


@with_model
def test_invalid_monomer_name():
assert_raises(ValueError, Monomer, 'a', 123)
assert len(model.monomers) == 0


@with_model
def test_invalid_parameter():
assert_raises(ValueError, Parameter, 'a', 'invalid_value')
assert len(model.parameters) == 0


@with_model
def test_invalid_compartment():
assert_raises(Exception, Compartment, 'c1', 'invalid_parent')
assert len(model.compartments) == 0


@with_model
def test_invalid_observable():
assert_raises(InvalidReactionPatternException,
Observable, 'o1', 'invalid_pattern')
assert len(model.observables) == 0

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