From bc604e2aaea8d225567aa70936519fc282839158 Mon Sep 17 00:00:00 2001 From: ffl096 Date: Thu, 25 May 2023 07:18:27 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20main=20from=20@=20pyt-team/Top?= =?UTF-8?q?oNetX@d7293462c827430b0fb43afee8c483ca2fda6804=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- toponetx/.doctrees/api/classes.doctree | Bin 811466 -> 809660 bytes toponetx/.doctrees/environment.pickle | Bin 506017 -> 505403 bytes .../notebooks/01_simplicial_complexes.doctree | Bin 1206980 -> 1206980 bytes .../notebooks/02_cell_complexes.doctree | Bin 556152 -> 556152 bytes .../03_combinatorial_complexes.doctree | Bin 617726 -> 617726 bytes .../toponetx/classes/simplicial_complex.html | 101 ++++++++---------- toponetx/api/classes.html | 12 +-- .../notebooks/01_simplicial_complexes.html | 2 +- toponetx/searchindex.js | 2 +- 9 files changed, 46 insertions(+), 71 deletions(-) diff --git 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zcmex&Q}y3X)eU!971E51OwBD)jgpNlOiU~-jS>ygEDel}4N?;gO^r+p%s2mKz0Rma zNL7u(WJxx^$u1ld6bUJvGTrbdhe$IgXFDe+BM>tIF*6Xe05K~NvjH(X5OZwjtIF*6Xe05K~NvjH(X5OZwjSource code for toponetx.classes.simplicial_complex
list of maximal simplices that define the simplicial complex name : hashable, optional, default: None If None then a placeholder '' will be inserted as name - mode : str, optional, default 'normal'. - computational mode, available options are "normal" or "gudhi". - default is 'normal'. - - Note : When ghudi is selected additioanl structure - obtained from the simplicial tree is stored. - this creates an additional reduannt storage - but it can be used for access the simplicial - tree of the complex. Notes ----- @@ -520,7 +511,7 @@

Source code for toponetx.classes.simplicial_complex

------- Set of simplices of dimension n. """ - if rank < len(self._simplex_set.faces_dict) and rank >= 0: + if rank < len(self._simplex_set.faces_dict): return sorted(tuple(i) for i in self._simplex_set.faces_dict[rank].keys()) # return list(self._simplex_set.faces_dict[n].keys()) if rank < 0: @@ -554,15 +545,22 @@

Source code for toponetx.classes.simplicial_complex

def __setitem__(self, simplex, **attr): """Set attributes to a simplex.""" - if isinstance(simplex, Simplex): - if simplex.nodes in self.faces_dict[len(simplex) - 1]: - self.faces_dict[len(simplex) - 1].update(attr) - elif isinstance(simplex, Iterable): - simplex = frozenset(simplex) - self.faces_dict[len(simplex) - 1].update(attr) - elif isinstance(simplex, Hashable): - if frozenset({simplex}) in self: - self.faces_dict[0].update(attr) + if simplex in self._simplex_set: + + if isinstance(simplex, Simplex): + if simplex.nodes in self.faces_dict[len(simplex) - 1]: + self.faces_dict[len(simplex) - 1].update(attr) + elif isinstance(simplex, Iterable): + simplex = frozenset(simplex) + if simplex in self.faces_dict[len(simplex) - 1]: + self.faces_dict[len(simplex) - 1].update(attr) + else: + raise KeyError( + f"simplex {simplex} is not in the simplex dictionary, add simplex using add_simplex." + ) + elif isinstance(simplex, Hashable): + if frozenset({simplex}) in self: + self.faces_dict[0].update(attr) def __iter__(self): """Iterate over all faces of the simplicial complex. @@ -660,61 +658,46 @@

Source code for toponetx.classes.simplicial_complex

self._simplex_set.faces_dict[k - 1][simplex_].update(attr) def _insert_node(self, simplex, **attr): - """Insert a node. - Parameters - ---------- - simplex : Hashable or Simplex - a Hashable or singlton Simplex representing a node in a simplicial complex. - - Returns - ------- - None. - """ if isinstance(simplex, Hashable) and not isinstance(simplex, Iterable): - self.add_simplex(simplex, **attr) + self.insert_simplex(simplex, **attr) return if isinstance(simplex, Iterable) or isinstance(simplex, Simplex): - if len(simplex) == 1: - if not isinstance(simplex, Simplex): - simplex_ = frozenset(sorted((simplex,))) - - else: - simplex_ = simplex.nodes - self._update_faces_dict_length(simplex_) + if not isinstance(simplex, Simplex): - if ( - simplex_ in self._simplex_set.faces_dict[0] - ): # simplex is already in the complex, just update the properties if needed - self._simplex_set.faces_dict[0][simplex_].update(attr) - return + simplex_ = frozenset(sorted((simplex,))) - if self._simplex_set.max_dim < len(simplex) - 1: - self._simplex_set.max_dim = len(simplex) - 1 + else: + simplex_ = simplex.nodes + self._update_faces_dict_length(simplex_) - if simplex_ not in self._simplex_set.faces_dict[0]: + if ( + simplex_ in self._simplex_set.faces_dict[0] + ): # simplex is already in the complex, just update the properties if needed + self._simplex_set.faces_dict[0][simplex_].update(attr) + return - self._simplex_set.faces_dict[0][simplex_] = { - "is_maximal": True, - "membership": set(), - } - else: - self._simplex_set.faces_dict[0][simplex_] = {"is_maximal": False} + if self._simplex_set.max_dim < len(simplex) - 1: + self._simplex_set.max_dim = len(simplex) - 1 - if isinstance(simplex, Simplex): + if simplex_ not in self._simplex_set.faces_dict[0]: - self._simplex_set.faces_dict[0][simplex_].update(simplex.properties) - else: - self._simplex_set.faces_dict[0][simplex_].update(attr) + self._simplex_set.faces_dict[0][simplex_] = { + "is_maximal": True, + "membership": set(), + } else: - raise ValueError( - "input simplex is not a singleton, use add_simplex to insert the simplex" - ) + self._simplex_set.faces_dict[0][simplex_] = {"is_maximal": False} + if isinstance(simplex, Simplex): + + self._simplex_set.faces_dict[0][simplex_].update(simplex.properties) + else: + self._simplex_set.faces_dict[0][simplex_].update(attr) else: - raise TypeError("input type must be iterable, or singleton Simplex") + raise TypeError("input type must be iterable, or Simplex") def _add_simplex(self, simplex, **attr): diff --git a/toponetx/api/classes.html b/toponetx/api/classes.html index 220eff1d..4ecf8762 100644 --- a/toponetx/api/classes.html +++ b/toponetx/api/classes.html @@ -2982,19 +2982,11 @@

Features +
Parameters:
-
    +

    • simplices (list, optional, default: None) – list of maximal simplices that define the simplicial complex

    • name (hashable, optional, default: None) – If None then a placeholder ‘’ will be inserted as name

      • -

    • mode (str, optional, default ‘normal’.) – computational mode, available options are “normal” or “gudhi”. -default is ‘normal’.

      -

      Note : When ghudi is selected additioanl structure -obtained from the simplicial tree is stored. -this creates an additional reduannt storage -but it can be used for access the simplicial -tree of the complex.

      -
diff --git a/toponetx/notebooks/01_simplicial_complexes.html b/toponetx/notebooks/01_simplicial_complexes.html index 40556f36..b69e1b01 100644 --- a/toponetx/notebooks/01_simplicial_complexes.html +++ b/toponetx/notebooks/01_simplicial_complexes.html @@ -455,7 +455,7 @@

Example 2 of simplicial complex: a graph with faces

the face set \([[2, 3, 4], [2, 4, 5]]\).

Vertices, edges and faces are known as 0-rank, 1-rank and 2-rank cells, respectively.

-

ed50077c49c54911a184580b10911d37

+

fb9750ab237e466db748029c21c6d10a

In ToponetX, the simplicial complex can be instantiated by specifying its edge set and face set. Notice in the code below that it is not needed to specify the whole edge set; it suffices to provide the edges which do not constitute boundaries of the faces.

 In [4]:
diff --git a/toponetx/searchindex.js b/toponetx/searchindex.js
index f2772118..79ce4ba3 100644
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+++ b/toponetx/searchindex.js
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"Packages & Modules": [[3, null]], "Transform": [[4, "module-toponetx.transform.graph_to_simplicial_complex"]], "Contributing": [[5, "contributing"]], "Making Changes": [[5, "making-changes"]], "Write Tests": [[5, "write-tests"]], "Run Tests": [[5, "run-tests"]], "Write Documentation": [[5, "write-documentation"]], "Intro to Docstrings": [[5, "intro-to-docstrings"]], "The Anatomy of a Docstring": [[5, "the-anatomy-of-a-docstring"]], "Docstring Examples": [[5, "docstring-examples"]], "\ud83c\udf10 TopoNetX (TNX) \ud83c\udf69": [[6, "toponetx-tnx"]], "\ud83c\udfaf Scope and functionality": [[6, "scope-and-functionality"]], "\ud83d\udee0\ufe0f Main features": [[6, "main-features"]], "\ud83d\udd0d References": [[6, "references"]], "\ud83e\uddbe Getting Started": [[6, "getting-started"]], "Introduction to Simplicial Complexes": [[7, "Introduction-to-Simplicial-Complexes"]], "Table of contents": [[7, "Table-of-contents"]], "0. Import required packages": [[7, "0.-Import-required-packages"]], "1. Simplexes": [[7, "1.-Simplexes"]], "Informal introduction to the notion of simplex": [[7, "Informal-introduction-to-the-notion-of-simplex"]], "Definition of convex hull": [[7, "Definition-of-convex-hull"]], "Definition of N-simplex": [[7, "Definition-of-N-simplex"]], "2. Simplicial complexes": [[7, "2.-Simplicial-complexes"]], "Definition of abstract simplicial complex": [[7, "Definition-of-abstract-simplicial-complex"]], "Example 1 of simplicial complex: a graph": [[7, "Example-1-of-simplicial-complex:-a-graph"]], "Example 2 of simplicial complex: a graph with faces": [[7, "Example-2-of-simplicial-complex:-a-graph-with-faces"]], "3. Incidence matrices": [[7, "3.-Incidence-matrices"]], "Definition of incidence matrix": [[7, "Definition-of-incidence-matrix"]], "Example 2 continued: incidence matrices": [[7, "Example-2-continued:-incidence-matrices"]], "4. Up-Laplacians": [[7, "4.-Up-Laplacians"]], "Definition of up-Laplacian": [[7, "Definition-of-up-Laplacian"]], "Example 2 continued: up-Laplacians": [[7, "Example-2-continued:-up-Laplacians"]], "5. Down-Laplacians": [[7, "5.-Down-Laplacians"]], "Definition of down-Laplacian": [[7, "Definition-of-down-Laplacian"], [8, "Definition-of-down-Laplacian"]], "Example 2 continued: down-Laplacians": [[7, "Example-2-continued:-down-Laplacians"]], "6. Hodge Laplacians": [[7, "6.-Hodge-Laplacians"]], "Definition of Hodge Laplacian": [[7, "Definition-of-Hodge-Laplacian"]], "Relation of Hodge Laplacian to up-Laplacian and down-Laplacian": [[7, "Relation-of-Hodge-Laplacian-to-up-Laplacian-and-down-Laplacian"], [8, "Relation-of-Hodge-Laplacian-to-up-Laplacian-and-down-Laplacian"]], "7. Assigning features": [[7, "7.-Assigning-features"]], "References": [[7, "References"], [8, "References"], [9, "References"]], "Cell Complexes": [[8, "Cell-Complexes"]], "Setup": [[8, "Setup"], [9, "Setup"]], "Example of a Cell Complex": [[8, "Example-of-a-Cell-Complex"]], "Example Continued": [[8, "Example-Continued"]], "Example": [[8, "Example"]], "up-Laplacian": [[8, "up-Laplacian"]], "Definition up-Laplacian": [[8, "Definition-up-Laplacian"]], "Example of up-Laplacian": [[8, "Example-of-up-Laplacian"]], "down-Laplacian": [[8, "down-Laplacian"]], "Example of down-Laplacian": [[8, "Example-of-down-Laplacian"]], "Hodge Laplacian": [[8, "Hodge-Laplacian"]], "Defintion of Hodge Laplacian": [[8, "Defintion-of-Hodge-Laplacian"]], "Combinatorial Complexes": [[9, "Combinatorial-Complexes"]], "Defintion of Combinatorial Complex": [[9, "Defintion-of-Combinatorial-Complex"]], "Example of a Combinatorial Complex": [[9, "Example-of-a-Combinatorial-Complex"]], "Helpful Code Output": [[9, "Helpful-Code-Output"]], "Adjacency": [[9, "Adjacency"]], "Adjacency Matrix": [[9, "Adjacency-Matrix"]], "Co-Adjacency Matrix": [[9, "Co-Adjacency-Matrix"]], "Incidence": [[9, "Incidence"]], "Incidence Matrix": [[9, "Incidence-Matrix"]], "Tutorials": [[10, "tutorials"]]}, "indexentries": {"align_eigenvectors_kl() (in module toponetx.algorithms.eigen_align)": [[0, "toponetx.algorithms.eigen_align.align_eigenvectors_kl"]], "cell_complex_adjacency_spectrum() (in module toponetx.algorithms.spectrum)": [[0, "toponetx.algorithms.spectrum.cell_complex_adjacency_spectrum"]], "cell_complex_hodge_laplacian_spectrum() (in module toponetx.algorithms.spectrum)": [[0, "toponetx.algorithms.spectrum.cell_complex_hodge_laplacian_spectrum"]], "combinatorial_complex_adjacency_spectrum() (in module toponetx.algorithms.spectrum)": [[0, "toponetx.algorithms.spectrum.combinatorial_complex_adjacency_spectrum"]], "compute_alignment() (in module toponetx.algorithms.eigen_align)": [[0, 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\ No newline at end of file
+Search.setIndex({"docnames": ["api/algorithms", "api/classes", "api/datasets", "api/index", "api/transform", "contributing/index", "index", "notebooks/01_simplicial_complexes", "notebooks/02_cell_complexes", "notebooks/03_combinatorial_complexes", "tutorials/index"], "filenames": ["api/algorithms.rst", "api/classes.rst", "api/datasets.rst", "api/index.rst", "api/transform.rst", "contributing/index.rst", "index.rst", "notebooks/01_simplicial_complexes.ipynb", "notebooks/02_cell_complexes.ipynb", "notebooks/03_combinatorial_complexes.ipynb", "tutorials/index.rst"], "titles": ["Algorithms", "Classes", "Datasets", "API Reference", "Transform", "Contributing", "\ud83c\udf10 TopoNetX (TNX) \ud83c\udf69", "Introduction to Simplicial Complexes", "Cell Complexes", "Combinatorial Complexes", "Tutorials"], "terms": {"util": [0, 1, 3], "relat": [0, 5, 6, 9], "eigen": 0, "decomposit": 0, "danielegrattarola": 0, "ginr": 0, "toponetx": [0, 1, 2, 3, 4, 5, 7, 8, 9], "eigen_align": 0, 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"module-toponetx.transform.graph_to_simplicial_complex"]], "Contributing": [[5, "contributing"]], "Making Changes": [[5, "making-changes"]], "Write Tests": [[5, "write-tests"]], "Run Tests": [[5, "run-tests"]], "Write Documentation": [[5, "write-documentation"]], "Intro to Docstrings": [[5, "intro-to-docstrings"]], "The Anatomy of a Docstring": [[5, "the-anatomy-of-a-docstring"]], "Docstring Examples": [[5, "docstring-examples"]], "\ud83c\udf10 TopoNetX (TNX) \ud83c\udf69": [[6, "toponetx-tnx"]], "\ud83c\udfaf Scope and functionality": [[6, "scope-and-functionality"]], "\ud83d\udee0\ufe0f Main features": [[6, "main-features"]], "\ud83d\udd0d References": [[6, "references"]], "\ud83e\uddbe Getting Started": [[6, "getting-started"]], "Introduction to Simplicial Complexes": [[7, "Introduction-to-Simplicial-Complexes"]], "Table of contents": [[7, "Table-of-contents"]], "0. Import required packages": [[7, "0.-Import-required-packages"]], "1. Simplexes": [[7, "1.-Simplexes"]], "Informal introduction to the notion of simplex": [[7, "Informal-introduction-to-the-notion-of-simplex"]], "Definition of convex hull": [[7, "Definition-of-convex-hull"]], "Definition of N-simplex": [[7, "Definition-of-N-simplex"]], "2. Simplicial complexes": [[7, "2.-Simplicial-complexes"]], "Definition of abstract simplicial complex": [[7, "Definition-of-abstract-simplicial-complex"]], "Example 1 of simplicial complex: a graph": [[7, "Example-1-of-simplicial-complex:-a-graph"]], "Example 2 of simplicial complex: a graph with faces": [[7, "Example-2-of-simplicial-complex:-a-graph-with-faces"]], "3. Incidence matrices": [[7, "3.-Incidence-matrices"]], "Definition of incidence matrix": [[7, "Definition-of-incidence-matrix"]], "Example 2 continued: incidence matrices": [[7, "Example-2-continued:-incidence-matrices"]], "4. Up-Laplacians": [[7, "4.-Up-Laplacians"]], "Definition of up-Laplacian": [[7, "Definition-of-up-Laplacian"]], "Example 2 continued: up-Laplacians": [[7, "Example-2-continued:-up-Laplacians"]], "5. Down-Laplacians": [[7, "5.-Down-Laplacians"]], "Definition of down-Laplacian": [[7, "Definition-of-down-Laplacian"], [8, "Definition-of-down-Laplacian"]], "Example 2 continued: down-Laplacians": [[7, "Example-2-continued:-down-Laplacians"]], "6. Hodge Laplacians": [[7, "6.-Hodge-Laplacians"]], "Definition of Hodge Laplacian": [[7, "Definition-of-Hodge-Laplacian"]], "Relation of Hodge Laplacian to up-Laplacian and down-Laplacian": [[7, "Relation-of-Hodge-Laplacian-to-up-Laplacian-and-down-Laplacian"], [8, "Relation-of-Hodge-Laplacian-to-up-Laplacian-and-down-Laplacian"]], "7. Assigning features": [[7, "7.-Assigning-features"]], "References": [[7, "References"], [8, "References"], [9, "References"]], "Cell Complexes": [[8, "Cell-Complexes"]], "Setup": [[8, "Setup"], [9, "Setup"]], "Example of a Cell Complex": [[8, "Example-of-a-Cell-Complex"]], "Example Continued": [[8, "Example-Continued"]], "Example": [[8, "Example"]], "up-Laplacian": [[8, "up-Laplacian"]], "Definition up-Laplacian": [[8, "Definition-up-Laplacian"]], "Example of up-Laplacian": [[8, "Example-of-up-Laplacian"]], "down-Laplacian": [[8, "down-Laplacian"]], "Example of down-Laplacian": [[8, "Example-of-down-Laplacian"]], "Hodge Laplacian": [[8, "Hodge-Laplacian"]], "Defintion of Hodge Laplacian": [[8, "Defintion-of-Hodge-Laplacian"]], "Combinatorial Complexes": [[9, "Combinatorial-Complexes"]], "Defintion of Combinatorial Complex": [[9, "Defintion-of-Combinatorial-Complex"]], "Example of a Combinatorial Complex": [[9, "Example-of-a-Combinatorial-Complex"]], "Helpful Code Output": [[9, "Helpful-Code-Output"]], "Adjacency": [[9, "Adjacency"]], "Adjacency Matrix": [[9, "Adjacency-Matrix"]], "Co-Adjacency Matrix": [[9, "Co-Adjacency-Matrix"]], "Incidence": [[9, "Incidence"]], "Incidence Matrix": [[9, "Incidence-Matrix"]], "Tutorials": [[10, "tutorials"]]}, "indexentries": {"align_eigenvectors_kl() (in module toponetx.algorithms.eigen_align)": [[0, "toponetx.algorithms.eigen_align.align_eigenvectors_kl"]], "cell_complex_adjacency_spectrum() (in module toponetx.algorithms.spectrum)": [[0, "toponetx.algorithms.spectrum.cell_complex_adjacency_spectrum"]], "cell_complex_hodge_laplacian_spectrum() (in module toponetx.algorithms.spectrum)": [[0, "toponetx.algorithms.spectrum.cell_complex_hodge_laplacian_spectrum"]], "combinatorial_complex_adjacency_spectrum() (in module toponetx.algorithms.spectrum)": [[0, "toponetx.algorithms.spectrum.combinatorial_complex_adjacency_spectrum"]], "compute_alignment() (in module toponetx.algorithms.eigen_align)": [[0, 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"neighbors() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.neighbors"]], "node_adjacency_matrix() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.node_adjacency_matrix"]], "node_diameters() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.node_diameters"]], "node_diameters() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.node_diameters"]], "nodes (toponetx.classes.cell_complex.cellcomplex property)": [[1, "toponetx.classes.cell_complex.CellComplex.nodes"]], "nodes (toponetx.classes.combinatorial_complex.combinatorialcomplex property)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.nodes"]], "nodes (toponetx.classes.complex.complex property)": [[1, "toponetx.classes.complex.Complex.nodes"]], "nodes (toponetx.classes.simplicial_complex.simplicialcomplex property)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.nodes"]], "normalized_laplacian_matrix() (toponetx.classes.simplicial_complex.simplicialcomplex method)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.normalized_laplacian_matrix"]], "number_of_cells() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.number_of_cells"]], "number_of_cells() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.number_of_cells"]], "number_of_edges() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.number_of_edges"]], "number_of_nodes() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.number_of_nodes"]], "number_of_nodes() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.number_of_nodes"]], "order() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.order"]], "order() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.order"]], "rank (toponetx.classes.hyperedge.hyperedge property)": [[1, "toponetx.classes.hyperedge.HyperEdge.rank"]], "ranks (toponetx.classes.combinatorial_complex.combinatorialcomplex property)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.ranks"]], "remove_cell() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.remove_cell"]], "remove_cell() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.remove_cell"]], "remove_cells() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.remove_cells"]], "remove_cells() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.remove_cells"]], "remove_equivalent_cells() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.remove_equivalent_cells"]], "remove_maximal_simplex() (toponetx.classes.simplicial_complex.simplicialcomplex method)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.remove_maximal_simplex"]], "remove_node() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.remove_node"]], "remove_node() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.remove_node"]], "remove_nodes() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.remove_nodes"]], "remove_nodes() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.remove_nodes"]], "remove_nodes() (toponetx.classes.complex.complex method)": [[1, "toponetx.classes.complex.Complex.remove_nodes"]], "remove_singletons() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.remove_singletons"]], "remove_singletons() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.remove_singletons"]], "restrict_to_cells() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.restrict_to_cells"]], "restrict_to_cells() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, 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"s_component_subgraphs() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.s_component_subgraphs"]], "s_components() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.s_components"]], "s_components() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.s_components"]], "s_connected_components() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.s_connected_components"]], "s_connected_components() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.s_connected_components"]], "set_cell_attributes() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.set_cell_attributes"]], "set_cell_attributes() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.set_cell_attributes"]], "set_filtration() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.set_filtration"]], "set_node_attributes() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.set_node_attributes"]], "set_simplex_attributes() (toponetx.classes.simplicial_complex.simplicialcomplex method)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.set_simplex_attributes"]], "shape (toponetx.classes.cell_complex.cellcomplex property)": [[1, "toponetx.classes.cell_complex.CellComplex.shape"]], "shape (toponetx.classes.combinatorial_complex.combinatorialcomplex property)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.shape"]], "shape (toponetx.classes.simplicial_complex.simplicialcomplex property)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.shape"]], "shape() (toponetx.classes.complex.complex method)": [[1, "toponetx.classes.complex.Complex.shape"]], "sign() (toponetx.classes.cell.cell method)": [[1, "toponetx.classes.cell.Cell.sign"]], "sign() (toponetx.classes.simplex.simplex method)": [[1, "toponetx.classes.simplex.Simplex.sign"]], "simplices (toponetx.classes.simplicial_complex.simplicialcomplex property)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.simplices"]], "simplicial_closure_of_hypergraph() (toponetx.classes.simplicial_complex.simplicialcomplex static method)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.simplicial_closure_of_hypergraph"]], "singletons() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.singletons"]], "singletons() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.singletons"]], "size() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.size"]], "size() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.size"]], "skeleton() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.skeleton"]], "skeleton() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.skeleton"]], "skeleton() (toponetx.classes.complex.complex method)": [[1, "toponetx.classes.complex.Complex.skeleton"]], "skeleton() (toponetx.classes.simplicial_complex.simplicialcomplex method)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.skeleton"]], "to_cell_complex() (toponetx.classes.simplicial_complex.simplicialcomplex method)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.to_cell_complex"]], "to_combinatorial_complex() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.to_combinatorial_complex"]], "to_combinatorial_complex() (toponetx.classes.simplicial_complex.simplicialcomplex method)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.to_combinatorial_complex"]], "to_hypergraph() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.to_hypergraph"]], "to_hypergraph() (toponetx.classes.combinatorial_complex.combinatorialcomplex method)": [[1, "toponetx.classes.combinatorial_complex.CombinatorialComplex.to_hypergraph"]], "to_hypergraph() (toponetx.classes.simplicial_complex.simplicialcomplex method)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.to_hypergraph"]], "to_spharapy() (toponetx.classes.simplicial_complex.simplicialcomplex method)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.to_spharapy"]], "to_trimesh() (toponetx.classes.simplicial_complex.simplicialcomplex method)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.to_trimesh"]], "toponetx.classes.cell": [[1, "module-toponetx.classes.cell"]], "toponetx.classes.cell_complex": [[1, "module-toponetx.classes.cell_complex"]], "toponetx.classes.combinatorial_complex": [[1, "module-toponetx.classes.combinatorial_complex"]], "toponetx.classes.complex": [[1, "module-toponetx.classes.complex"]], "toponetx.classes.hyperedge": [[1, "module-toponetx.classes.hyperedge"]], "toponetx.classes.simplex": [[1, "module-toponetx.classes.simplex"]], "toponetx.classes.simplicial_complex": [[1, "module-toponetx.classes.simplicial_complex"]], "up_laplacian_matrix() (toponetx.classes.cell_complex.cellcomplex method)": [[1, "toponetx.classes.cell_complex.CellComplex.up_laplacian_matrix"]], "up_laplacian_matrix() (toponetx.classes.simplicial_complex.simplicialcomplex method)": [[1, "toponetx.classes.simplicial_complex.SimplicialComplex.up_laplacian_matrix"]], "load_ppi() (in module toponetx.datasets.utils)": [[2, "toponetx.datasets.utils.load_ppi"]], "toponetx.datasets.utils": [[2, "module-toponetx.datasets.utils"]], "graph_2_clique_complex() (in module toponetx.transform.graph_to_simplicial_complex)": [[4, "toponetx.transform.graph_to_simplicial_complex.graph_2_clique_complex"]], "graph_2_neighbor_complex() (in module toponetx.transform.graph_to_simplicial_complex)": [[4, "toponetx.transform.graph_to_simplicial_complex.graph_2_neighbor_complex"]], "toponetx.transform.graph_to_simplicial_complex": [[4, "module-toponetx.transform.graph_to_simplicial_complex"]]}})
\ No newline at end of file