diff --git a/CHANGELOG.md b/CHANGELOG.md
index aabe40da..eca39bdf 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,6 +5,12 @@ chronological order. Releases follow [semantic versioning](https://semver.org/)
 releases are available on [PyPI](https://pypi.org/project/pytask) and
 [Anaconda.org](https://anaconda.org/conda-forge/pytask).
 
+## Unreleased
+
+- [#889](https://github.com/pytask-dev/pytask/pull/889) improves typing for tree
+  operations by wrapping optree's pytree utilities with pytask-specific signatures
+  and requiring optree 0.16.0 or newer.
+
 ## 0.6.0 - 2026-05-01
 
 - [#875](https://github.com/pytask-dev/pytask/pull/875) improves the documentation
diff --git a/pyproject.toml b/pyproject.toml
index e1769eca..03dd7ede 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -24,7 +24,7 @@ dependencies = [
     "click>=8.1.8,!=8.2.0",
     "click-default-group>=1.2.4",
     "msgspec>=0.18.6",
-    "optree>=0.9.0",
+    "optree>=0.16.0",
     "packaging>=23.0.0",
     "pluggy>=1.3.0",
     "rich>=13.8.0",
diff --git a/src/_pytask/collect_utils.py b/src/_pytask/collect_utils.py
index 15ec9263..b850bf34 100644
--- a/src/_pytask/collect_utils.py
+++ b/src/_pytask/collect_utils.py
@@ -12,11 +12,11 @@
 from _pytask._inspect import get_annotations
 from _pytask.exceptions import NodeNotCollectedError
 from _pytask.models import NodeInfo
+from _pytask.node_protocols import NodeTree
 from _pytask.node_protocols import PNode
 from _pytask.node_protocols import PProvisionalNode
 from _pytask.nodes import PythonNode
 from _pytask.task_utils import parse_keyword_arguments_from_signature_defaults
-from _pytask.tree_util import PyTree
 from _pytask.tree_util import tree_leaves
 from _pytask.tree_util import tree_map_with_path
 from _pytask.typing import ProductType
@@ -254,7 +254,7 @@ def _collect_nodes_and_provisional_nodes(  # noqa: PLR0913
     task_path: Path | None,
     parameter_name: str,
     value: Any,
-) -> PyTree[PProvisionalNode | PNode]:
+) -> NodeTree:
     return tree_map_with_path(
         lambda p, x: collection_func(
             session,
diff --git a/src/_pytask/node_protocols.py b/src/_pytask/node_protocols.py
index 27fadd30..b3ec4612 100644
--- a/src/_pytask/node_protocols.py
+++ b/src/_pytask/node_protocols.py
@@ -3,18 +3,29 @@
 from typing import TYPE_CHECKING
 from typing import Any
 from typing import Protocol
+from typing import TypeAlias
 from typing import runtime_checkable
 
+from _pytask.tree_util import PyTree
+
 if TYPE_CHECKING:
     from collections.abc import Callable
     from pathlib import Path
 
     from _pytask.mark import Mark
-    from _pytask.tree_util import PyTree
     from _pytask.typing import NodePath
 
 
-__all__ = ["PNode", "PPathNode", "PProvisionalNode", "PTask", "PTaskWithPath"]
+__all__ = [
+    "NodeTree",
+    "PNode",
+    "PPathNode",
+    "PProvisionalNode",
+    "PTask",
+    "PTaskWithPath",
+    "TaskIO",
+    "TaskNode",
+]
 
 
 @runtime_checkable
@@ -64,45 +75,6 @@ class PPathNode(PNode, Protocol):
     path: NodePath
 
 
-@runtime_checkable
-class PTask(Protocol):
-    """Protocol for nodes."""
-
-    name: str
-    depends_on: dict[str, PyTree[PNode | PProvisionalNode]]
-    produces: dict[str, PyTree[PNode | PProvisionalNode]]
-    function: Callable[..., Any]
-    markers: list[Mark]
-    report_sections: list[tuple[str, str, str]]
-    attributes: dict[Any, Any]
-
-    @property
-    def signature(self) -> str:
-        """Return the signature of the node."""
-
-    def state(self) -> str | None:
-        """Return the state of the node.
-
-        The state can be something like a hash or a last modified timestamp. If the node
-        does not exist, you can also return ``None``.
-
-        """
-
-    def execute(self, **kwargs: Any) -> Any:
-        """Return the value of the node that will be injected into the task."""
-
-
-@runtime_checkable
-class PTaskWithPath(PTask, Protocol):
-    """Tasks with paths.
-
-    Tasks with paths receive special handling when it comes to printing their names.
-
-    """
-
-    path: Path
-
-
 @runtime_checkable
 class PProvisionalNode(Protocol):
     """A protocol for provisional nodes.
@@ -141,3 +113,52 @@ def load(self, is_product: bool = False) -> Any:  # pragma: no cover
 
     def collect(self) -> list[Any]:
         """Collect the objects that are defined by the provisional nodes."""
+
+
+TaskNode: TypeAlias = PNode | PProvisionalNode
+"""A concrete or provisional pytask node."""
+
+NodeTree: TypeAlias = PyTree[TaskNode]
+"""A pytask tree whose leaves are concrete or provisional nodes."""
+
+TaskIO: TypeAlias = dict[str, NodeTree]
+"""The top-level task argument mapping for dependencies and products."""
+
+
+@runtime_checkable
+class PTask(Protocol):
+    """Protocol for nodes."""
+
+    name: str
+    depends_on: TaskIO
+    produces: TaskIO
+    function: Callable[..., Any]
+    markers: list[Mark]
+    report_sections: list[tuple[str, str, str]]
+    attributes: dict[Any, Any]
+
+    @property
+    def signature(self) -> str:
+        """Return the signature of the node."""
+
+    def state(self) -> str | None:
+        """Return the state of the node.
+
+        The state can be something like a hash or a last modified timestamp. If the node
+        does not exist, you can also return ``None``.
+
+        """
+
+    def execute(self, **kwargs: Any) -> Any:
+        """Return the value of the node that will be injected into the task."""
+
+
+@runtime_checkable
+class PTaskWithPath(PTask, Protocol):
+    """Tasks with paths.
+
+    Tasks with paths receive special handling when it comes to printing their names.
+
+    """
+
+    path: Path
diff --git a/src/_pytask/nodes.py b/src/_pytask/nodes.py
index 8910d289..a4e726ff 100644
--- a/src/_pytask/nodes.py
+++ b/src/_pytask/nodes.py
@@ -22,6 +22,7 @@
 from _pytask.node_protocols import PProvisionalNode
 from _pytask.node_protocols import PTask
 from _pytask.node_protocols import PTaskWithPath
+from _pytask.node_protocols import TaskIO
 from _pytask.path import hash_path
 from _pytask.typing import NoDefault
 from _pytask.typing import NodePath
@@ -34,7 +35,6 @@
 
     from _pytask.mark import Mark
     from _pytask.models import NodeInfo
-    from _pytask.tree_util import PyTree
 
 
 __all__ = [
@@ -77,10 +77,8 @@ class TaskWithoutPath(PTask):
 
     name: str
     function: Callable[..., Any]
-    depends_on: dict[str, PyTree[PNode | PProvisionalNode]] = field(
-        default_factory=dict
-    )
-    produces: dict[str, PyTree[PNode | PProvisionalNode]] = field(default_factory=dict)
+    depends_on: TaskIO = field(default_factory=dict)
+    produces: TaskIO = field(default_factory=dict)
     markers: list[Mark] = field(default_factory=list)
     report_sections: list[tuple[str, str, str]] = field(default_factory=list)
     attributes: dict[Any, Any] = field(default_factory=dict)
@@ -133,10 +131,8 @@ class Task(PTaskWithPath):
     path: Path
     function: Callable[..., Any]
     name: str = field(default="", init=False)
-    depends_on: dict[str, PyTree[PNode | PProvisionalNode]] = field(
-        default_factory=dict
-    )
-    produces: dict[str, PyTree[PNode | PProvisionalNode]] = field(default_factory=dict)
+    depends_on: TaskIO = field(default_factory=dict)
+    produces: TaskIO = field(default_factory=dict)
     markers: list[Mark] = field(default_factory=list)
     report_sections: list[tuple[str, str, str]] = field(default_factory=list)
     attributes: dict[Any, Any] = field(default_factory=dict)
diff --git a/src/_pytask/provisional_utils.py b/src/_pytask/provisional_utils.py
index 32271016..8522c306 100644
--- a/src/_pytask/provisional_utils.py
+++ b/src/_pytask/provisional_utils.py
@@ -10,13 +10,12 @@
 from _pytask.collect_utils import collect_dependency
 from _pytask.dag import create_dag_from_session
 from _pytask.models import NodeInfo
-from _pytask.node_protocols import PNode
+from _pytask.node_protocols import NodeTree
 from _pytask.node_protocols import PProvisionalNode
 from _pytask.node_protocols import PTask
 from _pytask.node_protocols import PTaskWithPath
 from _pytask.nodes import Task
 from _pytask.reports import ExecutionReport
-from _pytask.tree_util import PyTree
 from _pytask.tree_util import tree_map_with_path
 from _pytask.typing import is_task_generator
 
@@ -29,7 +28,7 @@
 
 def collect_provisional_nodes(
     session: Session, task: PTask, node: Any, path: tuple[Any, ...]
-) -> PyTree[PNode | PProvisionalNode]:
+) -> NodeTree:
     """Collect provisional nodes.
 
     1. Call the [`pytask.PProvisionalNode.collect`][] to receive the raw nodes.
diff --git a/src/_pytask/tree_util.py b/src/_pytask/tree_util.py
index ee8d137a..d5ee0d7e 100644
--- a/src/_pytask/tree_util.py
+++ b/src/_pytask/tree_util.py
@@ -2,18 +2,18 @@
 
 from __future__ import annotations
 
-import functools
+import typing  # noqa: F401  # Needed to resolve optree.PyTree forward refs.
+from collections.abc import Callable  # noqa: TC003  # Public annotations need it.
 from pathlib import Path
 from typing import TYPE_CHECKING
 from typing import Any
+from typing import TypeAlias
 from typing import TypeVar
+from typing import cast
+from typing import overload
 
 import optree
-from optree import tree_flatten_with_path as _optree_tree_flatten_with_path
-from optree import tree_leaves as _optree_tree_leaves
-from optree import tree_map as _optree_tree_map
-from optree import tree_map_with_path as _optree_tree_map_with_path
-from optree import tree_structure as _optree_tree_structure
+from optree import PyTreeSpec
 
 __all__ = [
     "TREE_UTIL_LIB_DIRECTORY",
@@ -26,13 +26,15 @@
 ]
 
 _T = TypeVar("_T")
+_U = TypeVar("_U")
+_K = TypeVar("_K")
 
 if TYPE_CHECKING:
     # Use our own recursive type alias for static type checking.
     # optree's PyTree uses __class_getitem__ to generate Union types at runtime,
     # but type checkers like ty cannot evaluate these dynamic types properly.
     # See: https://github.com/metaopt/optree/issues/251
-    PyTree = (
+    PyTree: TypeAlias = (
         _T | tuple["PyTree[_T]", ...] | list["PyTree[_T]"] | dict[Any, "PyTree[_T]"]
     )
 else:
@@ -41,17 +43,219 @@
 assert optree.__file__ is not None
 TREE_UTIL_LIB_DIRECTORY = Path(optree.__file__).parent
 
+_pytree = optree.pytree.reexport(namespace="pytask")
 
-tree_leaves = functools.partial(
-    _optree_tree_leaves, none_is_leaf=True, namespace="pytask"
-)
-tree_map = functools.partial(_optree_tree_map, none_is_leaf=True, namespace="pytask")
-tree_map_with_path = functools.partial(
-    _optree_tree_map_with_path, none_is_leaf=True, namespace="pytask"
-)
-tree_structure = functools.partial(
-    _optree_tree_structure, none_is_leaf=True, namespace="pytask"
-)
-tree_flatten_with_path = functools.partial(
-    _optree_tree_flatten_with_path, none_is_leaf=True, namespace="pytask"
-)
+
+def tree_leaves(
+    tree: PyTree[_T],
+    /,
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> list[_T]:
+    """Return the leaves of a pytask tree."""
+    return cast(
+        "list[_T]",
+        _pytree.leaves(
+            cast("Any", tree),
+            is_leaf,
+            none_is_leaf=True,
+        ),
+    )
+
+
+@overload
+def tree_map(
+    func: Callable[..., PyTree[_T]],
+    tree: dict[_K, PyTree[_T]],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> dict[_K, PyTree[_T]]: ...
+
+
+@overload
+def tree_map(
+    func: Callable[..., _U],
+    tree: dict[_K, PyTree[_T]],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> dict[_K, PyTree[_U]]: ...
+
+
+@overload
+def tree_map(
+    func: Callable[..., PyTree[_T]],
+    tree: list[PyTree[_T]],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> list[PyTree[_T]]: ...
+
+
+@overload
+def tree_map(
+    func: Callable[..., _U],
+    tree: list[PyTree[_T]],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> list[PyTree[_U]]: ...
+
+
+@overload
+def tree_map(
+    func: Callable[..., PyTree[_T]],
+    tree: tuple[PyTree[_T], ...],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> tuple[PyTree[_T], ...]: ...
+
+
+@overload
+def tree_map(
+    func: Callable[..., _U],
+    tree: tuple[PyTree[_T], ...],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> tuple[PyTree[_U], ...]: ...
+
+
+@overload
+def tree_map(
+    func: Callable[..., _U],
+    tree: PyTree[_T],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> PyTree[_U]: ...
+
+
+def tree_map(
+    func: Callable[..., Any],
+    tree: PyTree[Any],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> Any:
+    """Apply a function to each leaf of a pytask tree."""
+    return _pytree.map(
+        func,
+        cast("Any", tree),
+        *cast("tuple[Any, ...]", rests),
+        is_leaf=is_leaf,
+        none_is_leaf=True,
+    )
+
+
+@overload
+def tree_map_with_path(
+    func: Callable[..., PyTree[_T]],
+    tree: dict[_K, PyTree[_T]],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> dict[_K, PyTree[_T]]: ...
+
+
+@overload
+def tree_map_with_path(
+    func: Callable[..., _U],
+    tree: dict[_K, PyTree[_T]],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> dict[_K, PyTree[_U]]: ...
+
+
+@overload
+def tree_map_with_path(
+    func: Callable[..., PyTree[_T]],
+    tree: list[PyTree[_T]],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> list[PyTree[_T]]: ...
+
+
+@overload
+def tree_map_with_path(
+    func: Callable[..., _U],
+    tree: list[PyTree[_T]],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> list[PyTree[_U]]: ...
+
+
+@overload
+def tree_map_with_path(
+    func: Callable[..., PyTree[_T]],
+    tree: tuple[PyTree[_T], ...],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> tuple[PyTree[_T], ...]: ...
+
+
+@overload
+def tree_map_with_path(
+    func: Callable[..., _U],
+    tree: tuple[PyTree[_T], ...],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> tuple[PyTree[_U], ...]: ...
+
+
+@overload
+def tree_map_with_path(
+    func: Callable[..., _U],
+    tree: PyTree[_T],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> PyTree[_U]: ...
+
+
+def tree_map_with_path(
+    func: Callable[..., Any],
+    tree: PyTree[Any],
+    /,
+    *rests: PyTree[Any],
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> Any:
+    """Apply a function to each leaf and pass the leaf path."""
+    return _pytree.map_with_path(
+        func,
+        cast("Any", tree),
+        *cast("tuple[Any, ...]", rests),
+        is_leaf=is_leaf,
+        none_is_leaf=True,
+    )
+
+
+def tree_structure(
+    tree: PyTree[Any],
+    /,
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> PyTreeSpec:
+    """Return the tree structure of a pytask tree."""
+    return _pytree.structure(cast("Any", tree), is_leaf, none_is_leaf=True)
+
+
+def tree_flatten_with_path(
+    tree: PyTree[_T],
+    /,
+    is_leaf: Callable[[Any], bool] | None = None,
+) -> tuple[list[tuple[Any, ...]], list[_T], PyTreeSpec]:
+    """Flatten a pytask tree into paths, leaves, and structure."""
+    return cast(
+        "tuple[list[tuple[Any, ...]], list[_T], PyTreeSpec]",
+        _pytree.flatten_with_path(
+            cast("Any", tree),
+            is_leaf,
+            none_is_leaf=True,
+        ),
+    )
diff --git a/uv.lock b/uv.lock
index cfddea4f..b8c82f43 100644
--- a/uv.lock
+++ b/uv.lock
@@ -3028,7 +3028,7 @@ requires-dist = [
     { name = "msgspec", specifier = ">=0.18.6" },
     { name = "msgspec", extras = ["toml"], specifier = ">=0.18.6" },
     { name = "networkx", marker = "extra == 'dag'", specifier = ">=2.4.0" },
-    { name = "optree", specifier = ">=0.9.0" },
+    { name = "optree", specifier = ">=0.16.0" },
     { name = "packaging", specifier = ">=23.0.0" },
     { name = "pluggy", specifier = ">=1.3.0" },
     { name = "rich", specifier = ">=13.8.0" },
@@ -3928,26 +3928,26 @@ wheels = [
 
 [[package]]
 name = "ty"
-version = "0.0.33"
-source = { registry = "https://pypi.org/simple" }
-sdist = { url = "https://files.pythonhosted.org/packages/84/44/9478c50c266826c1bf30d1692e589755bffa8f1c0a3eb7af8a346c255991/ty-0.0.33.tar.gz", hash = "sha256:46d63bda07403322cb6c28ccfdd5536be916e13df725c29f7ccd0a21f06bd9e8", size = 5559373, upload-time = "2026-04-28T10:45:13.18Z" }
-wheels = [
-    { url = "https://files.pythonhosted.org/packages/e9/24/e287388c63a19191be26b32ff4dbd06029834068150ebe2532939bc4c851/ty-0.0.33-py3-none-linux_armv6l.whl", hash = "sha256:94d0a9d2234261a8911396d59e506b5923fe0971dbda43b9dcea287936887fcc", size = 11021308, upload-time = "2026-04-28T10:45:43.34Z" },
-    { url = "https://files.pythonhosted.org/packages/00/ca/ba1eed819895bd239fba8ee35dfcd5fcb266c203b0914a17a59579096bb5/ty-0.0.33-py3-none-macosx_10_12_x86_64.whl", hash = "sha256:e4a2b5ba078f90de342f56b5f7979bb77c9b9b1d8625a041352ffc6ee93c4073", size = 10777272, upload-time = "2026-04-28T10:45:32.905Z" },
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