From ebaba4eb89c3dbb1de7244e08ca45efb6d1e438c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jan=20Jan=C3=9Fen?= <janssen@mpie.de>
Date: Sat, 17 May 2025 06:28:45 +0200
Subject: [PATCH 1/2] Add CWL test

---
 .github/workflows/pipeline.yml | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/.github/workflows/pipeline.yml b/.github/workflows/pipeline.yml
index 6bb0b2a..7c72ceb 100644
--- a/.github/workflows/pipeline.yml
+++ b/.github/workflows/pipeline.yml
@@ -21,6 +21,7 @@ jobs:
     - name: Test
       shell: bash -l {0}
       run: |
+        conda install -c conda-forge -y aiida-workgraph=0.5.2
         verdi presto --profile-name pwd
         echo -e 'from aiida import load_profile\nload_profile()\n\nfrom python_workflow_definition.aiida import load_workflow_json\n\n\nif __name__ == "__main__":\n    workgraph = load_workflow_json(file_name="workflow.json")\n    workgraph.run()' > test_with_aiida.py
         python test_with_aiida.py
@@ -40,6 +41,7 @@ jobs:
     - name: Test
       shell: bash -l {0}
       run: |
+        conda install -c conda-forge -y jobflow=0.1.19
         echo -e 'from jobflow.managers.local import run_locally\nfrom python_workflow_definition.jobflow import load_workflow_json\n\n\nif __name__ == "__main__":\n    flow = load_workflow_json(file_name="workflow.json")\n    print(run_locally(flow))' > test_with_jobflow.py
         python test_with_jobflow.py
 
@@ -58,5 +60,26 @@ jobs:
     - name: Test
       shell: bash -l {0}
       run: |
+        conda install -c conda-forge -y pyiron_base=0.11.11
         echo -e 'from python_workflow_definition.pyiron_base import load_workflow_json\n\n\nif __name__ == "__main__":\n    delayed_object_lst = load_workflow_json(file_name="workflow.json")\n    print(delayed_object_lst[-1].pull())' > test_with_pyiron.py
         python test_with_pyiron.py
+
+  cwl:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+    - name: Conda config
+      run: echo -e "channels:\n  - conda-forge\n" > .condarc
+    - uses: conda-incubator/setup-miniconda@v3
+      with:
+        python-version: "3.12"
+        miniforge-version: latest
+        condarc-file: .condarc
+        environment-file: environment.yml
+    - name: Test
+      shell: bash -l {0}
+      run: |
+        conda install -c conda-forge -y cwltool=3.1.20250110105449
+        echo -e 'from python_workflow_definition.cwl import write_workflow\n\n\nif __name__ == "__main__":\n    write_workflow(file_name="workflow.json")' > test_with_cwl.py
+        python test_with_pyiron.py
+        cwltool workflow.cwl workflow.yml
\ No newline at end of file

From 7ecc133ceabbbabfe1c384eddf7d5b04eab2cc13 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jan=20Jan=C3=9Fen?= <janssen@mpie.de>
Date: Sat, 17 May 2025 06:31:47 +0200
Subject: [PATCH 2/2] fix

---
 .github/workflows/pipeline.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/pipeline.yml b/.github/workflows/pipeline.yml
index 7c72ceb..e5e1f73 100644
--- a/.github/workflows/pipeline.yml
+++ b/.github/workflows/pipeline.yml
@@ -81,5 +81,5 @@ jobs:
       run: |
         conda install -c conda-forge -y cwltool=3.1.20250110105449
         echo -e 'from python_workflow_definition.cwl import write_workflow\n\n\nif __name__ == "__main__":\n    write_workflow(file_name="workflow.json")' > test_with_cwl.py
-        python test_with_pyiron.py
+        python test_with_cwl.py
         cwltool workflow.cwl workflow.yml
\ No newline at end of file