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Add CWL test #6

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Merged
merged 2 commits into from
May 17, 2025
Merged

Add CWL test #6

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ebaba4e
Add CWL test
jan-janssen May 17, 2025
7ecc133
fix
jan-janssen May 17, 2025
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23 changes: 23 additions & 0 deletions .github/workflows/pipeline.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -21,6 +21,7 @@ jobs:
- name: Test
shell: bash -l {0}
run: |
conda install -c conda-forge -y aiida-workgraph=0.5.2
verdi presto --profile-name pwd
echo -e 'from aiida import load_profile\nload_profile()\n\nfrom python_workflow_definition.aiida import load_workflow_json\n\n\nif __name__ == "__main__":\n workgraph = load_workflow_json(file_name="workflow.json")\n workgraph.run()' > test_with_aiida.py
python test_with_aiida.py
Expand All @@ -40,6 +41,7 @@ jobs:
- name: Test
shell: bash -l {0}
run: |
conda install -c conda-forge -y jobflow=0.1.19
echo -e 'from jobflow.managers.local import run_locally\nfrom python_workflow_definition.jobflow import load_workflow_json\n\n\nif __name__ == "__main__":\n flow = load_workflow_json(file_name="workflow.json")\n print(run_locally(flow))' > test_with_jobflow.py
python test_with_jobflow.py

Expand All @@ -58,5 +60,26 @@ jobs:
- name: Test
shell: bash -l {0}
run: |
conda install -c conda-forge -y pyiron_base=0.11.11
echo -e 'from python_workflow_definition.pyiron_base import load_workflow_json\n\n\nif __name__ == "__main__":\n delayed_object_lst = load_workflow_json(file_name="workflow.json")\n print(delayed_object_lst[-1].pull())' > test_with_pyiron.py
python test_with_pyiron.py

cwl:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Conda config
run: echo -e "channels:\n - conda-forge\n" > .condarc
- uses: conda-incubator/setup-miniconda@v3
with:
python-version: "3.12"
miniforge-version: latest
condarc-file: .condarc
environment-file: environment.yml
- name: Test
shell: bash -l {0}
run: |
conda install -c conda-forge -y cwltool=3.1.20250110105449
echo -e 'from python_workflow_definition.cwl import write_workflow\n\n\nif __name__ == "__main__":\n write_workflow(file_name="workflow.json")' > test_with_cwl.py
python test_with_cwl.py
cwltool workflow.cwl workflow.yml
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