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Ensure qgis.db is writable when copied from RO source
In some package managers (such as NIX[1], used in NixOS[2]), all the data is
installed into a read-only file system.
When QGis is first launched on those systems, it copies the template
`qgis.db` from the share directory into the user private .local
directory, but keeps its permissions unchanged: readonly. Any attempt
from QGIS to update this file fails.
This commit makes sure that the `qgis.db` file is user writable when it
is copied from the installation directory.
[1] https://nixos.org/nix/
[2] https://nixos.org/
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