This is the official repository of QIIME 2 plugin for Meta-Storms 2.
Please install the Meta-Storms 2 software first. For details of Meta-Storms 2 installation, see https://github.com/qibebt-bioinfo/meta-storms.
a. Download the package:
git clone https://github.com/qibebt-bioinfo/q2-metastorms.git
cd q2-metastorms pip install -e . qiime dev refresh-cache
The package should take less than 1 minute to install on a computer with the specifications recommended above.
The example dataset could be found at “example” folder. Check the “example/Readme” for details about the demo run.
Notice for input
The input OTUs should be parsed by QIIME 2 closed-reference clustering against the Greengenes 13_8 97% OTUs reference database. For details about the OTU clustering, see https://docs.qiime2.org/2018.11/tutorials/otu-clustering.