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README.md

q2-metastorms

This is the official repository of QIIME 2 plugin for Meta-Storms 2.

Introduction

This is a QIIME 2 plugin of Meta-Storms 2. For details of Meta-Storms 2, see https://github.com/qibebt-bioinfo/meta-storms. For details of QIIME 2, see https://qiime2.org.

Software Requirements

Please install the Meta-Storms 2 software first. For details of Meta-Storms 2 installation, see https://github.com/qibebt-bioinfo/meta-storms.

Installation guide

a. Download the package:

git clone https://github.com/qibebt-bioinfo/q2-metastorms.git

b. Install:

cd q2-metastorms
pip install -e .
qiime dev refresh-cache

The package should take less than 1 minute to install on a computer with the specifications recommended above.

The example dataset could be found at “example” folder. Check the “example/Readme” for details about the demo run.

Notice for input

The input OTUs should be parsed by QIIME 2 closed-reference clustering against the Greengenes 13_8 97% OTUs reference database. For details about the OTU clustering, see https://docs.qiime2.org/2018.11/tutorials/otu-clustering.

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