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Updated for new biom-format 1.1.0 release.

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commit 2257cac6e671be3fa690a5d07a4b420d63a3d5df 1 parent 7549c06
Jai Ram Rideout authored December 13, 2012
4  biom-format-1.0.0-dev/README.md
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-qiime-deploy-conf
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-=================
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-
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-configuration files to be used for biom-format 1.0.0-dev.
4  biom-format-1.1.0-dev/README.md
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+qiime-deploy-conf
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+=================
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+
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+configuration files to be used for biom-format 1.1.0-dev.
17  biom-format-1.0.0-dev/biom-format.conf → biom-format-1.1.0-dev/biom-format.conf
@@ -39,14 +39,21 @@ release-location: http://sourceforge.net/projects/numpy/files/NumPy/1.5.1/numpy-
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 deps: python
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 [biom-format]
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-version: 1.0.0
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-build-type: copy
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+version: 1.1.0
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+build-type: python-distutils
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 repository-local-name: biom-format
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 repository-location: git://github.com/biom-format/biom-format.git
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 repository-type: git
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-deps: python, numpy
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-set-environment-variables-deploypath: PYTHONPATH=python-code/
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-relative-directory-add-to-path: scripts/
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+relative-directory-add-to-path: bin
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+deps: python, cython, numpy
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+
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+[cython]
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+version: 0.17
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+build-type: python-distutils
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+release-file-name: Cython-0.17.tar.gz
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+release-location: http://cython.org/release/Cython-0.17.tar.gz
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+relative-directory-add-to-path: bin
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+deps: python
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 [setuptools]
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 version: 0.6c11
4  biom-format-1.1.0/README.md
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+qiime-deploy-conf
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+=================
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+
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+configuration files to be used for biom-format 1.1.0.
62  biom-format-1.1.0/biom-format.conf
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+##############################################################################
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+#
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+# biom-format.conf
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+#
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+# qiime-deploy configuration file
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+# This file specifies the applications to download and deploy.
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+#
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+# This file contains a single [global] section and a single [dependencies]
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+# section as well as any number of data or application sections. Each section
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+# must have a unique name. Data sections must begin with data-
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+#
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+# See the OPTIONS file for a description of each option.
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+#
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+##############################################################################
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+
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+[dependencies]
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+commands: gcc, g++, java, javac, ant
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+
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+[global]
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+log-level: INFO
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+max-deploy-threads: 6
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+append-environment-to-bashrc: yes
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+append-environment-to-bashprofile: no
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+
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+[python]
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+version: 2.7.1
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+build-type: autoconf
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+release-file-name: Python-2.7.1.tgz
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+release-location: ftp://thebeast.colorado.edu/pub/QIIME-v1.5.0-dependencies/Python-2.7.1.tgz
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+relative-directory-add-to-path: bin
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+#autoconf-make-options: -j4
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+autoconf-configure-options: --enable-shared --with-zlib=/usr/include --enable-unicode=ucs2 --enable-unicode=ucs4
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+
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+[numpy]
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+version: 1.5.1
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+build-type: python-distutils
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+release-file-name: numpy-1.5.1.tar.gz
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+release-location: http://sourceforge.net/projects/numpy/files/NumPy/1.5.1/numpy-1.5.1.tar.gz
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+deps: python
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+
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+[biom-format]
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+version: 1.1.0
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+build-type: python-distutils
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+release-file-name: biom-format-1.1.0.tar.gz
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+release-location: ftp://thebeast.colorado.edu/pub/biom-format-releases/biom-format-1.1.0.tar.gz
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+relative-directory-add-to-path: bin
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+deps: python, cython, numpy
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+
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+[cython]
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+version: 0.17
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+build-type: python-distutils
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+release-file-name: Cython-0.17.tar.gz
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+release-location: http://cython.org/release/Cython-0.17.tar.gz
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+relative-directory-add-to-path: bin
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+deps: python
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+
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+[setuptools]
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+version: 0.6c11
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+build-type: python-distutils
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+release-file-name: setuptools-0.6c11.tar.gz
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+release-location: http://pypi.python.org/packages/source/s/setuptools/setuptools-0.6c11.tar.gz
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+deps: python
6  qiime-1.5.0-dev/qiime.conf
@@ -276,10 +276,10 @@ relative-directory-add-to-path: bin
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 deps: pycogent
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 [biom-format]
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-version: 1.0.0
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+version: 1.1.0
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 build-type: python-distutils
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-release-file-name: biom-format-1.0.0.tgz
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-release-location: https://github.com/downloads/biom-format/biom-format/biom-format-1.0.0.tgz
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+release-file-name: biom-format-1.1.0.tgz
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+release-location: ftp://thebeast.colorado.edu/pub/biom-format-releases/biom-format-1.1.0.tar.gz
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 relative-directory-add-to-path: bin
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 deps: python, cython, numpy
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