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Updated for new biom-format 1.1.0 release.

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1 parent 7549c06 commit 2257cac6e671be3fa690a5d07a4b420d63a3d5df @jairideout jairideout committed Dec 13, 2012
@@ -1,4 +0,0 @@
-qiime-deploy-conf
-=================
-
-configuration files to be used for biom-format 1.0.0-dev.
@@ -0,0 +1,4 @@
+qiime-deploy-conf
+=================
+
+configuration files to be used for biom-format 1.1.0-dev.
@@ -39,14 +39,21 @@ release-location: http://sourceforge.net/projects/numpy/files/NumPy/1.5.1/numpy-
deps: python
[biom-format]
-version: 1.0.0
-build-type: copy
+version: 1.1.0
+build-type: python-distutils
repository-local-name: biom-format
repository-location: git://github.com/biom-format/biom-format.git
repository-type: git
-deps: python, numpy
-set-environment-variables-deploypath: PYTHONPATH=python-code/
-relative-directory-add-to-path: scripts/
+relative-directory-add-to-path: bin
+deps: python, cython, numpy
+
+[cython]
+version: 0.17
+build-type: python-distutils
+release-file-name: Cython-0.17.tar.gz
+release-location: http://cython.org/release/Cython-0.17.tar.gz
+relative-directory-add-to-path: bin
+deps: python
[setuptools]
version: 0.6c11
@@ -0,0 +1,4 @@
+qiime-deploy-conf
+=================
+
+configuration files to be used for biom-format 1.1.0.
@@ -0,0 +1,62 @@
+##############################################################################
+#
+# biom-format.conf
+#
+# qiime-deploy configuration file
+# This file specifies the applications to download and deploy.
+#
+# This file contains a single [global] section and a single [dependencies]
+# section as well as any number of data or application sections. Each section
+# must have a unique name. Data sections must begin with data-
+#
+# See the OPTIONS file for a description of each option.
+#
+##############################################################################
+
+[dependencies]
+commands: gcc, g++, java, javac, ant
+
+[global]
+log-level: INFO
+max-deploy-threads: 6
+append-environment-to-bashrc: yes
+append-environment-to-bashprofile: no
+
+[python]
+version: 2.7.1
+build-type: autoconf
+release-file-name: Python-2.7.1.tgz
+release-location: ftp://thebeast.colorado.edu/pub/QIIME-v1.5.0-dependencies/Python-2.7.1.tgz
+relative-directory-add-to-path: bin
+#autoconf-make-options: -j4
+autoconf-configure-options: --enable-shared --with-zlib=/usr/include --enable-unicode=ucs2 --enable-unicode=ucs4
+
+[numpy]
+version: 1.5.1
+build-type: python-distutils
+release-file-name: numpy-1.5.1.tar.gz
+release-location: http://sourceforge.net/projects/numpy/files/NumPy/1.5.1/numpy-1.5.1.tar.gz
+deps: python
+
+[biom-format]
+version: 1.1.0
+build-type: python-distutils
+release-file-name: biom-format-1.1.0.tar.gz
+release-location: ftp://thebeast.colorado.edu/pub/biom-format-releases/biom-format-1.1.0.tar.gz
+relative-directory-add-to-path: bin
+deps: python, cython, numpy
+
+[cython]
+version: 0.17
+build-type: python-distutils
+release-file-name: Cython-0.17.tar.gz
+release-location: http://cython.org/release/Cython-0.17.tar.gz
+relative-directory-add-to-path: bin
+deps: python
+
+[setuptools]
+version: 0.6c11
+build-type: python-distutils
+release-file-name: setuptools-0.6c11.tar.gz
+release-location: http://pypi.python.org/packages/source/s/setuptools/setuptools-0.6c11.tar.gz
+deps: python
@@ -276,10 +276,10 @@ relative-directory-add-to-path: bin
deps: pycogent
[biom-format]
-version: 1.0.0
+version: 1.1.0
build-type: python-distutils
-release-file-name: biom-format-1.0.0.tgz
-release-location: https://github.com/downloads/biom-format/biom-format/biom-format-1.0.0.tgz
+release-file-name: biom-format-1.1.0.tgz
+release-location: ftp://thebeast.colorado.edu/pub/biom-format-releases/biom-format-1.1.0.tar.gz
relative-directory-add-to-path: bin
deps: python, cython, numpy

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