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Commits on Jul 17, 2016
  1. Merge pull request #150 from vimalkvn/master

    antgonza committed on GitHub Jul 17, 2016
    Update URL of infernal archive. selab.janelia.org now redirects to eddylab.org
Commits on Jul 15, 2016
Commits on Apr 15, 2016
  1. Merge pull request #149 from vimalkvn/master

    jairideout committed Apr 15, 2016
    update URL of BLAST archive
  2. update URL of BLAST archive

    vimalkvn committed Apr 15, 2016
Commits on Dec 6, 2015
  1. Merge pull request #147 from jairideout/issue-146

    gregcaporaso committed Dec 6, 2015
    MAINT: remove QIIME 1.7.0 and 1.8.0 config files
Commits on Dec 5, 2015
Commits on May 22, 2015
  1. Merge pull request #145 from gregcaporaso/st-fix

    jairideout committed May 22, 2015
    updated to explicitly define unzipped dir name
Commits on May 21, 2015
  1. fix biocore/qiime#2007

    antgonza committed May 21, 2015
Commits on Feb 23, 2015
  1. Merge pull request #142 from jairideout/sourcetracker-0.9.8

    jairideout committed Feb 23, 2015
    MAINT: update to SourceTracker 0.9.8
Commits on Jan 20, 2015
  1. Merge pull request #141 from jairideout/1.9.0-update

    gregcaporaso committed Jan 20, 2015
    MAINT: rename qiime-dev folder to qiime-1.9.0
  2. MAINT: rename qiime-dev folder to qiime-1.9.0

    jairideout committed Jan 20, 2015
    Necessary for upcoming QIIME 1.9.0 release.
Commits on Jan 14, 2015
  1. Merge pull request #140 from jairideout/remove-smr-swarm

    gregcaporaso committed Jan 14, 2015
    MAINT: remove SortMeRNA and swarm
  2. MAINT: remove sumaclust, flex, and m4

    jairideout committed Jan 14, 2015
    sumaclust will also be installed via QIIME's setup.py.
  3. MAINT: remove SortMeRNA and swarm

    jairideout committed Jan 14, 2015
    These will be installed via QIIME's setup.py in an upcoming pull request.
Commits on Jan 9, 2015
  1. Merge pull request #139 from jairideout/issue-109

    gregcaporaso committed Jan 9, 2015
    MAINT: remove pplacer and parsinsert
  2. MAINT: remove pplacer and parsinsert

    jairideout committed Jan 9, 2015
    Fixes #109.
  3. Merge pull request #138 from jairideout/gg_removal

    gregcaporaso committed Jan 9, 2015
    MAINT: remove Greengenes and coreset from QIIME conf
Commits on Jan 7, 2015
  1. Merge pull request #137 from jairideout/seqprep-v1.1-update

    gregcaporaso committed Jan 7, 2015
    Update to use SeqPrep v1.1
  2. Update to use SeqPrep v1.1

    jairideout committed Jan 7, 2015
    Instead of the latest development version (this doesn't compile on Ubuntu). See jstjohn/SeqPrep#22
Commits on Dec 20, 2014
  1. Merge pull request #136 from ekopylova/fix_1748

    jairideout committed Dec 20, 2014
    Fix 1748
Commits on Dec 19, 2014
  1. update swarm 1.2.7 to 1.2.19

    ekopylova committed Dec 19, 2014
  2. updated versions

    ekopylova committed Dec 19, 2014
  3. Merge pull request #135 from jairideout/remove-r-packages

    gregcaporaso committed Dec 19, 2014
    Remove R packages; update links to ftp.microbio.me
Commits on Dec 16, 2014
  1. fixed gg link

    gregcaporaso committed Dec 16, 2014
  2. temporarily using dropbox links for ...

    gregcaporaso committed Dec 16, 2014
    ... thebeast/microbio.me downloads while those systems are in transition
Commits on Dec 15, 2014
  1. updating swarm download link

    gregcaporaso committed Dec 15, 2014
    trying to fix an issue where jenkins fails while trying to get swarm, though we can't reproduce this issue on either Mac OS or Linux
Commits on Dec 13, 2014
  1. Merge pull request #134 from antgonza/deseq2

    antgonza committed Dec 13, 2014
    adding deseq2
  2. adding deseq2

    antgonza committed Dec 13, 2014