remove old QIIME configs
Now that we only officially support the latest and previous QIIME releases, we can get rid of these older configs. I'm pretty sure many of the dependencies didn't work anyways because we haven't always been updating those links.
updated to reflect pynast's move to the biocore organization
remove python targets and unnecessary R targets
Hotfix for QIIME_CONFIG_FP env var
This variable is being set twice by qiime-deploy after qiime/qiime-deploy#56 was merged. New strategy is to have qiime-deploy set the env var.
Add --without-x option to R target
update qiime-dev conf to use GG 13_8
This made it into 1.8.0 conf but not latest dev conf
Updating qiime-1.8.0/qiime.conf in order to install gg_13_5 instead of gg_12_10
Config file dirs for releases have not been modified. The latest development version of each project can now be found under <projectname>-dev/ instead of e.g., <projectname>-1.0.0-dev/. This change will allow Jenkins to have an easier time with new releases / version updates and hopefully make the process more seamless than it is now.
Adding files for 1.8.0
update to pynast 1.2.2
Update emperor target to 0.9.3
Remove emperor conf
Now that emperor is pip-installable and is being tested by travis-ci, we can trash this config file.
Remove biom-format config files
These were only put in place to allow Jenkins to easily install the biom-format project. Now that biom-format is being tested using Travis (and that it is easily installable via pip), we no longer need these configs.