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Updated example output to match latest changes made to compare_catego…

…ries.py.
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commit 429e2d784939369f44bcb6828f934c9ff95be01e 1 parent 768d8c0
@jairideout jairideout authored
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8 compare_categories/adonis_out/adonis_results.txt
@@ -2,9 +2,9 @@
Call:
adonis(formula = as.dist(qiime.data$distmat) ~ qiime.data$map[[opts$category]], permutations = opts$num_permutations)
- Df SumsOfSqs MeanSqs F.Model R2 Pr(>F)
-qiime.data$map[[opts$category]] 1 0.45007 0.45007 2.2967 0.24704 0.011 *
-Residuals 7 1.37177 0.19597 0.75296
-Total 8 1.82183 1.00000
+ Df SumsOfSqs MeanSqs F.Model R2 Pr(>F)
+qiime.data$map[[opts$category]] 1 0.45007 0.45007 2.2967 0.24704 0.01 **
+Residuals 7 1.37177 0.19597 0.75296
+Total 8 1.82183 1.00000
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
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4 compare_categories/anosim_out/anosim_results.txt
@@ -1,2 +1,2 @@
-Method Name R-value P-value
-ANOSIM 0.8125 0.03
+Method name R statistic p-value Number of permutations
+ANOSIM 0.8125 0.03 99
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