diff --git a/q2_types/sample_data/tests/test_transformer.py b/q2_types/sample_data/tests/test_transformer.py index 4aa5b290..5dd18bd2 100644 --- a/q2_types/sample_data/tests/test_transformer.py +++ b/q2_types/sample_data/tests/test_transformer.py @@ -26,7 +26,12 @@ def test_pd_series_to_alpha_diversity_format(self): name='shannon', index=exp_index) obs = transformer(exp) - obs = pd.Series.from_csv(str(obs), sep='\t', header=0) + ''' + Squeeze equals true in function call below to convert single column + dataframe to series + ''' + obs = pd.read_csv(str(obs), sep='\t', header=0, index_col=0, + squeeze=True) assert_series_equal(exp, obs)