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add JoinedFastqManifestPhred33 as a format for joined reads #162
This seems like it kind of counteracts the distinction between semantic type and format, since there isn't really a difference here between single and joined from a data-structure perspective.
In my mind we would want to share the formats between SingleEnd and JoinedEnd as it means less code, testing, and transformers.
Granted the current naming is probably confusing.