From de8d58ca26326a1211e429f97c91a564b8db0c86 Mon Sep 17 00:00:00 2001 From: AmandaBirmingham Date: Fri, 11 Aug 2023 14:37:00 -0700 Subject: [PATCH 1/2] install guide updates --- INSTALL.md | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/INSTALL.md b/INSTALL.md index 712898710..7a09bb179 100644 --- a/INSTALL.md +++ b/INSTALL.md @@ -181,7 +181,7 @@ github organization. Each of the plugins have their own installation instruction suggest looking at each individual .travis.yml file to see detailed installation instructions. Note that the most common plugins are: - [qtp-biom](https://github.com/qiita-spots/qtp-biom) -- [qtp-target-gene](https://github.com/qiita-spots/qtp-target-gene) +- [qtp-sequencing](https://github.com/qiita-spots/qtp-sequencing) - [qp-target-gene](https://github.com/qiita-spots/qp-target-gene) ## Configure Qiita @@ -206,9 +206,7 @@ Set your `QIITA_CONFIG_FP` environment variable to point to that file (into `.ba source activate qiita ``` -Update paths in the newly copied configuration file to match your settings, e.g. replace /home/travis/ with your user home directory. - -If you are working on WSL, you will need to start the redis server with the following command before making a test environment: +If you are working on Mac OS X or WSL, you will need to start the redis server with the following command before making a test environment: ```bash redis-server --daemonize yes --port 7777 ``` @@ -224,7 +222,7 @@ Finally, redbiom relies on the REDBIOM_HOST environment variable to set the URL export REDBIOM_HOST=http://my_host.com:7379 ``` -## Confirgure NGINX and supervisor +## Configure NGINX and supervisor (NGINX)[https://www.nginx.com/] is not a requirement for Qiita development but it's highly recommended for deploys as this will allow us to have multiple workers. Note that we are already installing (NGINX)[https://www.nginx.com/] within the Qiita conda environment; also, From 4b37f8c1b749feb0d3918781328de12bae36d5e5 Mon Sep 17 00:00:00 2001 From: Amanda Birmingham Date: Mon, 14 Aug 2023 12:18:28 -0700 Subject: [PATCH 2/2] One extra space added to trigger build --- INSTALL.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/INSTALL.md b/INSTALL.md index 7a09bb179..f23e85f38 100644 --- a/INSTALL.md +++ b/INSTALL.md @@ -1,5 +1,5 @@ -Qiita installation +Qiita installation ================== Qiita is pip installable, but depends on specific versions of python and non-python packages that must be installed first. We strongly recommend using virtual environments; a popular solution to manage them is [miniconda](http://conda.pydata.org/miniconda.html), a lightweight version of the virtual environment, python distribution, and package manager anaconda. These instructions will be based on miniconda.