Create a folder test with the following folders in it:
Then include contents and filter the type "folder" (in the "Types" field next to the depth slider). folder.js and folder.txt will not be indexed, but the other two will.
Excluding instead of including also gets it wrong (the opposite way).
Files are not detected as folders, even without an extension.
Presumably, a folder name ending with a "file extension" is heuristically treated as a file. This may make sense (certain packages like .app are basically folders, but are supposed to look like files to users), but there are valid reasons to have a "file extension" in a folder name.
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