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Installation

dmatch relies on the following R packages: Rcpp, RcppArmadillo, mvtnorm, RcppEigen, irlba. All packagess are hosted on CRAN.

install.packages("Rcpp")
install.packages("RcppArmadillo")
install.packages("mvtnorm")
install.packages("RcppEigen")
install.packages("irlba")

Install development version from GitHub:

install.packages("devtools")
library(devtools)
devtools::install_github("qzhan321/dmatch")

Quick start

For a quick start, visit our website to see a detailed tutorial with examples and the references for functions in dmatch illustrating its usage at: https://qzhan321.github.io/dmatch/.

The complete analysis pipeline in the tutorial section is also included in this R script. Simply run:

R CMD BATCH ExamplePipeline.R

All the images and final corrected data will be generated in the current working directory.

Contact us

If you have any enquires, especially about performing dmatch integration on your data, please create an issue at https://github.com/qzhan321/dmatch/issues.

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