A model of BSE spread among multiple species
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README.md
one_species_model.py
plot
run.sh
two_species_model.py

README.md

Barnes2013-BSE

This archive contains the code used in the manuscript

Modeling of bovine spongiform encephalopathy in a two-species feedback loop

By: Richard Barnes and Clarence Lehman

doi: 10.1016/j.epidem.2013.04.001

To generate the figures, open a command line and type:

./run.sh

This will run ./one_species_model.py and ./two_species_model.py with the arguments used to generate the figures in the manuscript.

The figures will then be automatically plotted with the ./plot script.

The figures will then be automatically converted to PDF and cropped.

Please contact Richard Barnes (rbarnes@umn.edu) with any questions or comments.

Requirements

  • Python
  • Scipy
  • GnuPlot
  • epspdf (from TexLive)
  • pdfcrop (from TeXLive)
  • This will run best on GNU/Linux systems