RSQLite does not install and ends up with catastrophic error

[lolow]

When trying to install a recent version of RSQLite, I get this error:

> remotes::install_version("RSQLite")
Downloading package from url: https://cloud.r-project.org/src/contrib/RSQLite_2.2.18.tar.gz
Installing package into ‘/work/seme/ad05922/R/x86_64-pc-linux-gnu-library/4.0’
(as ‘lib’ is unspecified)
* installing *source* package ‘RSQLite’ ...
** package ‘RSQLite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
icpc -std=gnu++11 -I"/zeus/opt/intel20.1/R/4.0.2/lib64/R/include" -DNDEBUG -I. -Ivendor -Ivendor/extensions -Ivendor/sqlite3 -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DRCPP_DEFAULT_INCLUDE_CALL=false -DRCPP_USING_UTF8_ERROR_STRING -DBOOST_NO_AUTO_PTR -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/work/seme/ad05922/R/x86_64-pc-linux-gnu-library/4.0/plogr/include' -I'/work/seme/ad05922/R/x86_64-pc-linux-gnu-library/4.0/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -c DbColumn.cpp -o DbColumn.o
In file included from vendor/boost/container/stable_vector.hpp(68),
                 from RSQLite.h(14),
                 from pch.h(1),
                 from DbColumn.cpp(1):
vendor/boost/container/vector.hpp(2705): warning #2196: routine is both "inline" and "noinline"
     BOOST_CONTAINER_NOINLINE iterator priv_insert_forward_range_no_capacity
     ^

In file included from vendor/boost/container/stable_vector.hpp(68),
                 from RSQLite.h(14),
                 from pch.h(1),
                 from DbColumn.cpp(1):
vendor/boost/container/vector.hpp(2722): warning #2196: routine is both "inline" and "noinline"
     BOOST_CONTAINER_NOINLINE iterator priv_insert_forward_range_no_capacity
     ^

In file included from vendor/boost/preprocessor/control/while.hpp(323),
                 from vendor/boost/preprocessor/arithmetic/add.hpp(60),
                 from vendor/boost/mpl/aux_/preprocessor/def_params_tail.hpp(66),
                 from vendor/boost/mpl/aux_/na_spec.hpp(28),
                 from vendor/boost/mpl/if.hpp(19),
                 from vendor/boost/ptr_container/detail/default_deleter.hpp(15),
                 from vendor/boost/ptr_container/detail/static_move_ptr.hpp(23),
                 from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp(22),
                 from vendor/boost/ptr_container/ptr_sequence_adapter.hpp(20),
                 from vendor/boost/ptr_container/ptr_vector.hpp(20),
                 from RSQLite.h(15),
                 from pch.h(1),
                 from DbColumn.cpp(1):
vendor/boost/preprocessor/list/fold_left.hpp(341): catastrophic error: cannot open source file "boost/preprocessor/list/detail/edg/fold_left.hpp"
  #    include <boost/preprocessor/list/detail/edg/fold_left.hpp>
                                                                 ^

compilation aborted for DbColumn.cpp (code 4)
make: *** [DbColumn.o] Error 4

Note, the use of the icpc compiler. The version 2.2.5 is working well. The system has boost version 1.73.0 installed.

Thanks for any help!

[krlmlr]

Thanks, doh. Looks like we need to make even more Boost files available to support this particular compiler. We vendor relevant parts of Boost, apparently not enough.

[lolow]

Is there a way I can help? If the workflow is to add the missing files from the last archive of boost (1.80), then I can create a branch for it. Would this process work?

[krlmlr]

Thanks. It might be better to use the same version of the BH R package that we did when initializing, most likely BH 1.75.. See #362 for the original PR and breadcrumbs.