XML has troubles installing on R 4.2 #559
Description
Describe the bug
{XML} is being installed on ubuntu and is having issues with R >= v4.2
{XML} is installing system requirements and is being built from source. This is expected. It fails during compilation.
To Reproduce
Workflow run: https://github.com/rstudio/shinycoreci/runs/6458218526?check_suite_focus=true
Expected behavior
I expect {XML} to be installed on ubuntu without error.
Additional context
Reprex workflow
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
name: XML Debug
jobs:
debug:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- uses: r-lib/actions/setup-r-dependencies@v2
with:
packages: any::XML, any::sessioninfo
extra-packages: any::rcmdcheck
needs: check
Failure when creating lock file
2022-05-16T18:51:17.0629973Z ##[group]Installing/updating packages
2022-05-16T18:51:17.9373398Z ℹ Installing lockfile '.github/pkg.lock'
2022-05-16T18:51:18.4865568Z
2022-05-16T18:51:18.4877018Z → Will install 2 packages.
2022-05-16T18:51:18.5053260Z → Will download 2 CRAN packages (1.04 MB).
2022-05-16T18:51:18.5106169Z + rcmdcheck 1.4.0 [bld][dl] (73.52 kB)
2022-05-16T18:51:18.5107232Z + XML 3.99-0.3 [bld][cmp][dl] (968.54 kB)
2022-05-16T18:51:18.5255911Z ℹ Getting 2 pkgs (1.04 MB)
2022-05-16T18:51:19.4482746Z ✔ Got XML 3.99-0.3 (source) (971.31 kB)
2022-05-16T18:51:19.5022140Z ✔ Got rcmdcheck 1.4.0 (source) (168.57 kB)
2022-05-16T18:51:19.5264322Z ℹ Installing system requirements
2022-05-16T18:51:19.5323639Z ℹ Executing `sudo sh -c apt-get install -y libcurl4-openssl-dev`
2022-05-16T18:51:19.5853332Z Reading package lists...
2022-05-16T18:51:19.7785138Z Building dependency tree...
2022-05-16T18:51:19.9592547Z Reading state information...
2022-05-16T18:51:20.1468750Z The following additional packages will be installed:
2022-05-16T18:51:20.1476100Z curl libcurl4
2022-05-16T18:51:20.1483209Z Suggested packages:
2022-05-16T18:51:20.1484023Z libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev
2022-05-16T18:51:20.2097111Z The following NEW packages will be installed:
2022-05-16T18:51:20.2110613Z libcurl4-openssl-dev
2022-05-16T18:51:20.2134825Z The following packages will be upgraded:
2022-05-16T18:51:20.2144050Z curl libcurl4
2022-05-16T18:51:20.2596272Z 2 upgraded, 1 newly installed, 0 to remove and 73 not upgraded.
2022-05-16T18:51:20.3444271Z Need to get 718 kB of archives.
2022-05-16T18:51:20.3445231Z After this operation, 1543 kB of additional disk space will be used.
2022-05-16T18:51:20.3446556Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 curl amd64 7.68.0-1ubuntu2.11 [162 kB]
2022-05-16T18:51:20.4050806Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4 amd64 7.68.0-1ubuntu2.11 [235 kB]
2022-05-16T18:51:20.4351556Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-openssl-dev amd64 7.68.0-1ubuntu2.11 [322 kB]
2022-05-16T18:51:20.8653647Z Fetched 718 kB in 0s (4830 kB/s)
2022-05-16T18:51:20.9093610Z (Reading database ...
2022-05-16T18:51:20.9177470Z (Reading database ... 5%
2022-05-16T18:51:20.9178123Z (Reading database ... 10%
2022-05-16T18:51:20.9180457Z (Reading database ... 15%
2022-05-16T18:51:20.9180939Z (Reading database ... 20%
2022-05-16T18:51:20.9181435Z (Reading database ... 25%
2022-05-16T18:51:20.9183833Z (Reading database ... 30%
2022-05-16T18:51:20.9184317Z (Reading database ... 35%
2022-05-16T18:51:20.9184717Z (Reading database ... 40%
2022-05-16T18:51:20.9185135Z (Reading database ... 45%
2022-05-16T18:51:20.9185546Z (Reading database ... 50%
2022-05-16T18:51:20.9186027Z (Reading database ... 55%
2022-05-16T18:51:20.9211374Z (Reading database ... 60%
2022-05-16T18:51:20.9253458Z (Reading database ... 65%
2022-05-16T18:51:20.9305755Z (Reading database ... 70%
2022-05-16T18:51:20.9332385Z (Reading database ... 75%
2022-05-16T18:51:20.9469765Z (Reading database ... 80%
2022-05-16T18:51:20.9493730Z (Reading database ... 85%
2022-05-16T18:51:20.9907200Z (Reading database ... 90%
2022-05-16T18:51:21.0305946Z (Reading database ... 95%
2022-05-16T18:51:21.0375610Z (Reading database ... 100%
2022-05-16T18:51:21.0376383Z (Reading database ... 250123 files and directories currently installed.)
2022-05-16T18:51:21.0502553Z Preparing to unpack .../curl_7.68.0-1ubuntu2.11_amd64.deb ...
2022-05-16T18:51:21.0542520Z Unpacking curl (7.68.0-1ubuntu2.11) over (7.68.0-1ubuntu2.10) ...
2022-05-16T18:51:21.1252915Z Preparing to unpack .../libcurl4_7.68.0-1ubuntu2.11_amd64.deb ...
2022-05-16T18:51:21.1286093Z Unpacking libcurl4:amd64 (7.68.0-1ubuntu2.11) over (7.68.0-1ubuntu2.10) ...
2022-05-16T18:51:21.1785943Z Selecting previously unselected package libcurl4-openssl-dev:amd64.
2022-05-16T18:51:21.2052119Z Preparing to unpack .../libcurl4-openssl-dev_7.68.0-1ubuntu2.11_amd64.deb ...
2022-05-16T18:51:21.2072847Z Unpacking libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.11) ...
2022-05-16T18:51:21.3006210Z Setting up libcurl4:amd64 (7.68.0-1ubuntu2.11) ...
2022-05-16T18:51:21.3054358Z Setting up curl (7.68.0-1ubuntu2.11) ...
2022-05-16T18:51:21.3075154Z Setting up libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.11) ...
2022-05-16T18:51:21.3132051Z Processing triggers for man-db (2.9.1-1) ...
2022-05-16T18:51:22.4328966Z Processing triggers for libc-bin (2.31-0ubuntu9.7) ...
2022-05-16T18:51:25.8109071Z ℹ Executing `sudo sh -c apt-get install -y libxml2-dev`
2022-05-16T18:51:25.8650850Z Reading package lists...
2022-05-16T18:51:25.8847353Z Building dependency tree...
2022-05-16T18:51:26.0864752Z Reading state information...
2022-05-16T18:51:26.2959746Z libxml2-dev is already the newest version (2.9.10+dfsg-5ubuntu0.20.04.2).
2022-05-16T18:51:26.2960688Z libxml2-dev set to manually installed.
2022-05-16T18:51:26.3921774Z 0 upgraded, 0 newly installed, 0 to remove and 73 not upgraded.
2022-05-16T18:51:26.4728815Z ℹ Executing `sudo sh -c apt-get install -y libssl-dev`
2022-05-16T18:51:26.5266170Z Reading package lists...
2022-05-16T18:51:26.5461285Z Building dependency tree...
2022-05-16T18:51:26.7422347Z Reading state information...
2022-05-16T18:51:26.9237819Z libssl-dev is already the newest version (1.1.1f-1ubuntu2.13).
2022-05-16T18:51:27.0159731Z 0 upgraded, 0 newly installed, 0 to remove and 73 not upgraded.
2022-05-16T18:51:27.1191252Z ℹ Building XML 3.99-0.3
2022-05-16T18:51:27.3890538Z ℹ Building rcmdcheck 1.4.0
2022-05-16T18:51:27.6809253Z ✔ Built rcmdcheck 1.4.0 (264ms)
2022-05-16T18:51:27.7775507Z ✔ Installed rcmdcheck 1.4.0 (44ms)
2022-05-16T18:51:30.2366977Z ✖ Failed to build XML 3.99-0.3
2022-05-16T18:51:30.3370808Z
2022-05-16T18:51:30.3412895Z ##[error]Error: <callr_remote_error: Failed to build source package 'XML'>
2022-05-16T18:51:30.3422775Z in process 8256
2022-05-16T18:51:30.3423254Z -->
2022-05-16T18:51:30.3423770Z Failed to build source package 'XML', stdout + stderr:
2022-05-16T18:51:30.3423989Z
2022-05-16T18:51:30.3424371Z OE> * installing *source* package ‘XML’ ...
2022-05-16T18:51:30.3424976Z OE> ** package ‘XML’ successfully unpacked and MD5 sums checked
2022-05-16T18:51:30.3425446Z OE> staged installation is only possible with locking
2022-05-16T18:51:30.3425888Z OE> ** using non-staged installation
2022-05-16T18:51:30.3426229Z OE> checking for gcc... gcc
2022-05-16T18:51:30.3426624Z OE> checking whether the C compiler works... yes
2022-05-16T18:51:30.3427089Z OE> checking for C compiler default output file name... a.out
2022-05-16T18:51:30.3427510Z OE> checking for suffix of executables...
2022-05-16T18:51:30.3427914Z OE> checking whether we are cross compiling... no
2022-05-16T18:51:30.3428325Z OE> checking for suffix of object files... o
2022-05-16T18:51:30.3428769Z OE> checking whether we are using the GNU C compiler... yes
2022-05-16T18:51:30.3429255Z OE> checking whether gcc accepts -g... yes
2022-05-16T18:51:30.3429706Z OE> checking for gcc option to accept ISO C89... none needed
2022-05-16T18:51:30.3430199Z OE> checking how to run the C preprocessor... gcc -E
2022-05-16T18:51:30.3430575Z OE> checking for sed... /usr/bin/sed
2022-05-16T18:51:30.3431059Z OE> checking for pkg-config... /usr/bin/pkg-config
2022-05-16T18:51:30.3431576Z OE> checking for xml2-config... /usr/bin/xml2-config
2022-05-16T18:51:30.3431907Z OE> USE_XML2 = yes
2022-05-16T18:51:30.3432243Z OE> SED_EXTENDED_ARG: -E
2022-05-16T18:51:30.3432573Z OE> Minor 9, Patch 10 for 2.9.10
2022-05-16T18:51:30.3433054Z OE> Located parser file -I/usr/include/libxml2/parser.h
2022-05-16T18:51:30.3433550Z OE> Checking for 1.8: -I/usr/include/libxml2
2022-05-16T18:51:30.3434426Z OE> Using libxml2.*
2022-05-16T18:51:30.3434842Z OE> checking for gzopen in -lz... yes
2022-05-16T18:51:30.3435320Z OE> checking for xmlParseFile in -lxml2... yes
2022-05-16T18:51:30.3435789Z OE> checking for xmlHashSize in -lxml2... yes
2022-05-16T18:51:30.3436202Z OE> Using built-in xmlHashSize
2022-05-16T18:51:30.3436959Z OE> Checking DTD parsing (presence of externalSubset)...
2022-05-16T18:51:30.3437481Z OE> checking for xmlHashSize in -lxml2... yes
2022-05-16T18:51:30.3437932Z OE> Found xmlHashSize
2022-05-16T18:51:30.3438469Z OE> checking for xmlOutputBufferCreateBuffer in -lxml2... yes
2022-05-16T18:51:30.3438903Z OE> have xmlOutputBufferCreateBuffer()
2022-05-16T18:51:30.3439472Z OE> checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes
2022-05-16T18:51:30.3439931Z OE> checking libxml/xmlversion.h usability... yes
2022-05-16T18:51:30.3440359Z OE> checking libxml/xmlversion.h presence... yes
2022-05-16T18:51:30.3440767Z OE> checking for libxml/xmlversion.h... yes
2022-05-16T18:51:30.3441088Z OE> Expat: FALSE
2022-05-16T18:51:30.3441483Z OE> Checking for return type of xmlHashScan element routine.
2022-05-16T18:51:30.3441875Z OE> No return value for xmlHashScan
2022-05-16T18:51:30.3442215Z OE> xmlNs has a context field
2022-05-16T18:51:30.3442560Z OE> Checking for cetype_t enumeration
2022-05-16T18:51:30.3443039Z OE> Using recent version of R with cetype_t enumeration type for encoding
2022-05-16T18:51:30.3443517Z OE> checking for xmlsec1-config... no
2022-05-16T18:51:30.3443840Z OE> nodegc default
2022-05-16T18:51:30.3444188Z OE> xml-debug default
2022-05-16T18:51:30.3444506Z OE> Version has XML_WITH_ZLIB
2022-05-16T18:51:30.3444841Z OE> Version has xmlHasFeature()
2022-05-16T18:51:30.3445098Z OE>
2022-05-16T18:51:30.3445391Z OE> ****************************************
2022-05-16T18:51:30.3445719Z OE> Configuration information:
2022-05-16T18:51:30.3445972Z OE>
2022-05-16T18:51:30.3446230Z OE> Libxml settings
2022-05-16T18:51:30.3446462Z OE>
2022-05-16T18:51:30.3446887Z OE> libxml include directory: -I/usr/include/libxml2
2022-05-16T18:51:30.3447391Z OE> libxml library directory: -lxml2 -lz -lxml2
2022-05-16T18:51:30.3447841Z OE> libxml 2: -DLIBXML2=1
2022-05-16T18:51:30.3448095Z OE>
2022-05-16T18:51:30.3449805Z OE> Compilation flags: -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1
2022-05-16T18:51:30.3450747Z OE> Link flags: -lxml2 -lz -lxml2
2022-05-16T18:51:30.3451012Z OE>
2022-05-16T18:51:30.3451302Z OE> ****************************************
2022-05-16T18:51:30.3451843Z OE> configure: creating ./config.status
2022-05-16T18:51:30.3452244Z OE> config.status: creating src/Makevars
2022-05-16T18:51:30.3452634Z OE> config.status: creating R/supports.R
2022-05-16T18:51:30.3453052Z OE> config.status: creating inst/scripts/RSXML.csh
2022-05-16T18:51:30.3453469Z OE> config.status: creating inst/scripts/RSXML.bsh
2022-05-16T18:51:30.3453787Z OE> ** libs
2022-05-16T18:51:30.3492699Z OE> gcc -I"/opt/R/4.2.0/lib/R/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -fpic -g -O2 -Wall -pedantic -c DocParse.c -o DocParse.o
2022-05-16T18:51:30.3493939Z OE> DocParse.c: In function ‘RS_XML_ParseTree’:
2022-05-16T18:51:30.3512919Z OE> DocParse.c:165:7: error: ‘PROBLEM’ undeclared (first use in this function)
2022-05-16T18:51:30.3513529Z OE> 165 | PROBLEM "Can't find file %s", CHAR_DEREF(STRING_ELT(fileName, 0))
2022-05-16T18:51:30.3513872Z OE> | ^~~~~~~
2022-05-16T18:51:30.3514368Z OE> DocParse.c:165:7: note: each undeclared identifier is reported only once for each function it appears in
2022-05-16T18:51:30.3514952Z OE> DocParse.c:165:14: error: expected ‘;’ before string constant
2022-05-16T18:51:30.3515759Z OE> 165 | PROBLEM "Can't find file %s", CHAR_DEREF(STRING_ELT(fileName, 0))
2022-05-16T18:51:30.3516235Z OE> | ^~~~~~~~~~~~~~~~~~~~~
2022-05-16T18:51:30.3516612Z OE> | ;
2022-05-16T18:51:30.3517125Z OE> DocParse.c:229:14: error: expected ‘;’ before string constant
2022-05-16T18:51:30.3517542Z OE> 229 | PROBLEM "error in creating parser for %s", name
2022-05-16T18:51:30.3517912Z OE> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-05-16T18:51:30.3518171Z OE> | ;
2022-05-16T18:51:30.3518632Z OE> DocParse.c:249:11: error: expected ‘;’ before string constant
2022-05-16T18:51:30.3519010Z OE> 249 | PROBLEM "XML document is invalid"
2022-05-16T18:51:30.3519341Z OE> | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2022-05-16T18:51:30.3519600Z OE> | ;
2022-05-16T18:51:30.3520109Z OE> DocParse.c: In function ‘RS_XML_internalNodeNamespaceDefinitions’:
2022-05-16T18:51:30.3520724Z OE> DocParse.c:519:8: error: ‘PROBLEM’ undeclared (first use in this function)
2022-05-16T18:51:30.3521270Z OE> 519 | PROBLEM "R_internalNodeNamespaceDefinitions expects InternalXMLNode objects"
2022-05-16T18:51:30.3521652Z OE> | ^~~~~~~
2022-05-16T18:51:30.3522105Z OE> DocParse.c:519:15: error: expected ‘;’ before string constant
2022-05-16T18:51:30.3522623Z OE> 519 | PROBLEM "R_internalNodeNamespaceDefinitions expects InternalXMLNode objects"
2022-05-16T18:51:30.3523111Z OE> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-05-16T18:51:30.3523402Z OE> | ;
2022-05-16T18:51:30.3523814Z OE> DocParse.c: In function ‘R_getNodeChildByIndex’:
2022-05-16T18:51:30.3524383Z OE> DocParse.c:1254:2: error: ‘PROBLEM’ undeclared (first use in this function)
2022-05-16T18:51:30.3524874Z OE> 1254 | PROBLEM "cannot index an internal node with a negative number %d", num
2022-05-16T18:51:30.3525199Z OE> | ^~~~~~~
2022-05-16T18:51:30.3525651Z OE> DocParse.c:1254:9: error: expected ‘;’ before string constant
2022-05-16T18:51:30.3526111Z OE> 1254 | PROBLEM "cannot index an internal node with a negative number %d", num
2022-05-16T18:51:30.3526529Z OE> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-05-16T18:51:30.3526802Z OE> | ;
2022-05-16T18:51:30.3527216Z OE> DocParse.c: In function ‘RS_XML_setDocumentName’:
2022-05-16T18:51:30.3527778Z OE> DocParse.c:1303:2: error: ‘PROBLEM’ undeclared (first use in this function)
2022-05-16T18:51:30.3528229Z OE> 1303 | PROBLEM "NULL pointer supplied for internal document"
2022-05-16T18:51:30.3528535Z OE> | ^~~~~~~
2022-05-16T18:51:30.3528970Z OE> DocParse.c:1303:9: error: expected ‘;’ before string constant
2022-05-16T18:51:30.3529391Z OE> 1303 | PROBLEM "NULL pointer supplied for internal document"
2022-05-16T18:51:30.3529775Z OE> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-05-16T18:51:30.3530043Z OE> | ;
2022-05-16T18:51:30.3530469Z OE> DocParse.c: In function ‘RS_XML_getDocumentName’:
2022-05-16T18:51:30.3531027Z OE> DocParse.c:1326:2: error: ‘PROBLEM’ undeclared (first use in this function)
2022-05-16T18:51:30.3531467Z OE> 1326 | PROBLEM "NULL pointer supplied for internal document"
2022-05-16T18:51:30.3531916Z OE> | ^~~~~~~
2022-05-16T18:51:30.3532370Z OE> DocParse.c:1326:9: error: expected ‘;’ before string constant
2022-05-16T18:51:30.3532796Z OE> 1326 | PROBLEM "NULL pointer supplied for internal document"
2022-05-16T18:51:30.3533181Z OE> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-05-16T18:51:30.3533444Z OE> | ;
2022-05-16T18:51:30.3533903Z OE> DocParse.c: In function ‘RS_XML_xmlXIncludeProcessTreeFlags’:
2022-05-16T18:51:30.3534607Z OE> DocParse.c:1375:2: error: ‘PROBLEM’ undeclared (first use in this function)
2022-05-16T18:51:30.3534992Z OE> 1375 | PROBLEM "failed in XInclude"
2022-05-16T18:51:30.3535263Z OE> | ^~~~~~~
2022-05-16T18:51:30.3535853Z OE> DocParse.c:1375:9: error: expected ‘;’ before string constant
2022-05-16T18:51:30.3536220Z OE> 1375 | PROBLEM "failed in XInclude"
2022-05-16T18:51:30.3536603Z OE> | ^~~~~~~~~~~~~~~~~~~~~
2022-05-16T18:51:30.3536858Z OE> | ;
2022-05-16T18:51:30.3537241Z OE> make: *** [/opt/R/4.2.0/lib/R/etc/Makeconf:168: DocParse.o] Error 1
2022-05-16T18:51:30.3537708Z OE> ERROR: compilation failed for package ‘XML’
2022-05-16T18:51:30.3538182Z OE> * removing ‘/tmp/RtmpafhyXs/pkg-lib204014b5fb69/XML’
2022-05-16T18:51:30.3538377Z
2022-05-16T18:51:30.3538581Z Stack trace:
2022-05-16T18:51:30.3538701Z
2022-05-16T18:51:30.3538833Z 12. (function (...) ...
2022-05-16T18:51:30.3539248Z 13. base:::withCallingHandlers(cli_message = function(msg) { ...
2022-05-16T18:51:30.3539682Z 14. get("lockfile_install_internal", asNamespace("pak"))(...)
2022-05-16T18:51:30.3539999Z 15. plan$install()
2022-05-16T18:51:30.3540395Z 16. pkgdepends:::install_package_plan(plan, lib = private$library, ...
2022-05-16T18:51:30.3540826Z 17. base:::withCallingHandlers({ ...
2022-05-16T18:51:30.3541175Z 18. pkgdepends:::handle_events(state, events)
2022-05-16T18:51:30.3541529Z 19. pkgdepends:::handle_event(state, i)
2022-05-16T18:51:30.3541870Z 20. pkgdepends:::stop_task(state, worker)
2022-05-16T18:51:30.3542235Z 21. pkgdepends:::stop_task_build(state, worker)
2022-05-16T18:51:30.3542690Z 22. base:::throw(new_pkg_build_error("Failed to build source package {pkg}", ...
2022-05-16T18:51:30.3543060Z 23. base:::signalCondition(cond)
2022-05-16T18:51:30.3543335Z 24. (function (e) ...
2022-05-16T18:51:30.3543572Z 25. base:::stop(e)
2022-05-16T18:51:30.3543824Z 26. (function (e) ...
2022-05-16T18:51:30.3543963Z
2022-05-16T18:51:30.3544210Z x Failed to build source package 'XML'
2022-05-16T18:51:30.3544378Z
2022-05-16T18:51:30.3544495Z Execution halted
2022-05-16T18:51:30.3632270Z ##[error]Process completed with exit code 1.
2022-05-16T18:51:30.3762480Z Post job cleanup.
2022-05-16T18:51:30.3800956Z Post job cleanup.
2022-05-16T18:51:30.5111433Z [command]/usr/bin/git version
2022-05-16T18:51:30.5164154Z git version 2.36.1
2022-05-16T18:51:30.5210679Z Temporarily overriding HOME='/home/runner/work/_temp/f0b8abfa-e599-42c2-9f56-a18bd91127dd' before making global git config changes
2022-05-16T18:51:30.5213442Z Adding repository directory to the temporary git global config as a safe directory
2022-05-16T18:51:30.5220236Z [command]/usr/bin/git config --global --add safe.directory /home/runner/work/shinycoreci/shinycoreci
2022-05-16T18:51:30.5266980Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2022-05-16T18:51:30.5309376Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :
2022-05-16T18:51:30.5641586Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2022-05-16T18:51:30.5722198Z http.https://github.com/.extraheader
2022-05-16T18:51:30.5744356Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader
2022-05-16T18:51:30.5789989Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :
2022-05-16T18:51:30.6333280Z Cleaning up orphan processes