Related to #869, if I am trying to install a package that has a dependency on rmarkdown and rmarkdown is not installed, I see this:
> install_github("dtenenba/anRpackage", build_vignettes=TRUE, repos="http://bioconductor.org/packages/3.2/bioc", dependencies=TRUE, type="source")
Downloading github repo dtenenba/anRpackage@master
Installing anRpackage
Skipping 1 packages not available: BiocCheck
Installing 1 packages: rmarkdown
Warning in utils::install.packages(pkgs, repos = repos, type = type, ..., :
'lib = "http://cran.rstudio.com"' is not writable
Would you like to use a personal library instead? (y/n)
Sounds like devtools (or someone?) thinks that it should install the package in the http://cran.rstudio.com directory on my machine, which is obviously not a valid directory name.
Not sure how the lib argument got set to that. I have no trouble installing the package with:
install.packages("rmarkdown", repos="http://cran.rstudio.com")
> session_info()
Session info -------------------------------------------------------------------
setting value
version R version 3.2.1 (2015-06-18)
system x86_64, darwin13.4.0
ui X11
language (EN)
collate en_US.UTF-8
tz America/Los_Angeles
Packages -----------------------------------------------------------------------
package * version date source
curl 0.9.1 2015-07-04 CRAN (R 3.2.0)
devtools * 1.8.0 2015-05-09 CRAN (R 3.2.0)
digest 0.6.8 2014-12-31 CRAN (R 3.2.0)
git2r 0.10.1 2015-05-07 CRAN (R 3.2.0)
memoise 0.2.1 2014-04-22 CRAN (R 3.2.0)
Rcpp 0.11.6 2015-05-01 CRAN (R 3.2.0)
rversions 1.0.1 2015-06-06 CRAN (R 3.2.0)
xml2 0.1.1 2015-06-02 CRAN (R 3.2.0)
Related to #869, if I am trying to install a package that has a dependency on rmarkdown and rmarkdown is not installed, I see this:
Sounds like devtools (or someone?) thinks that it should install the package in the
http://cran.rstudio.comdirectory on my machine, which is obviously not a valid directory name.Not sure how the
libargument got set to that. I have no trouble installing the package with: