diff --git a/cran-comments.md b/cran-comments.md index 9555c85df..8114d3191 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -4,4 +4,4 @@ ## revdepcheck results -I did not run rev deps since this is a patch release (and most packages don't actually run pkgdown from `R CMD check`). \ No newline at end of file +I checked all 139 revdeps and did not see any problems. \ No newline at end of file diff --git a/revdep/README.md b/revdep/README.md index 416ef205b..7a3e9ac96 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,8 +1,23 @@ # Revdeps -## New problems (1) +## Failed to check (16) -|package |version |error |warning |note | -|:-------|:-------|:------|:-------|:----| -|[portalr](problems.md#portalr)|0.3.10 |__+1__ | | | +|package |version |error |warning |note | +|:---------------------|:-------|:-----|:-------|:----| +|biocthis |? | | | | +|biscuiteer |? | | | | +|CiteFuse |? | | | | +|decoupleR |? | | | | +|dorothea |? | | | | +|GenomicSuperSignature |? | | | | +|lefser |? | | | | +|netZooR |? | | | | +|periodicDNA |? | | | | +|scClassify |? | | | | +|singscore |? | | | | +|SPIAT |? | | | | +|spicyR |? | | | | +|velociraptor |? | | | | +|vissE |? | | | | +|VplotR |? | | | | diff --git a/revdep/cran.md b/revdep/cran.md index 53d09372c..a4c3eda28 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,15 +1,7 @@ ## revdepcheck results -We checked 114 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. +We checked 155 reverse dependencies (139 from CRAN + 16 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. - * We saw 1 new problems + * We saw 0 new problems * We failed to check 0 packages -Issues with CRAN packages are summarised below. - -### New problems -(This reports the first line of each new failure) - -* portalr - checking tests ... ERROR - diff --git a/revdep/failures.md b/revdep/failures.md index 9a2073633..09cc30c36 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1 +1,560 @@ -*Wow, no problems at all. :)* \ No newline at end of file +# biocthis + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/biocthis +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "biocthis")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# biscuiteer + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/biscuiteer +* Number of recursive dependencies: 222 + +Run `revdepcheck::cloud_details(, "biscuiteer")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# CiteFuse + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/CiteFuse +* Number of recursive dependencies: 182 + +Run `revdepcheck::cloud_details(, "CiteFuse")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# decoupleR + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/decoupleR +* Number of recursive dependencies: 260 + +Run `revdepcheck::cloud_details(, "decoupleR")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# dorothea + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/dorothea +* Number of recursive dependencies: 215 + +Run `revdepcheck::cloud_details(, "dorothea")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# GenomicSuperSignature + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/GenomicSuperSignature +* Number of recursive dependencies: 272 + +Run `revdepcheck::cloud_details(, "GenomicSuperSignature")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# lefser + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/lefser +* Number of recursive dependencies: 214 + +Run `revdepcheck::cloud_details(, "lefser")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# netZooR + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/netZooR +* Number of recursive dependencies: 227 + +Run `revdepcheck::cloud_details(, "netZooR")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# periodicDNA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/periodicDNA +* Number of recursive dependencies: 129 + +Run `revdepcheck::cloud_details(, "periodicDNA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# scClassify + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/scClassify +* Number of recursive dependencies: 162 + +Run `revdepcheck::cloud_details(, "scClassify")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# singscore + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/singscore +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "singscore")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# SPIAT + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/SPIAT +* Number of recursive dependencies: 184 + +Run `revdepcheck::cloud_details(, "SPIAT")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# spicyR + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/spicyR +* Number of recursive dependencies: 246 + +Run `revdepcheck::cloud_details(, "spicyR")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# velociraptor + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/velociraptor +* Number of recursive dependencies: 237 + +Run `revdepcheck::cloud_details(, "velociraptor")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# vissE + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/vissE +* Number of recursive dependencies: 202 + +Run `revdepcheck::cloud_details(, "vissE")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# VplotR + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/VplotR +* Number of recursive dependencies: 144 + +Run `revdepcheck::cloud_details(, "VplotR")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` diff --git a/revdep/problems.md b/revdep/problems.md index f37039442..9a2073633 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,38 +1 @@ -# portalr - -
- -* Version: 0.3.10 -* GitHub: https://github.com/weecology/portalr -* Source code: https://github.com/cran/portalr -* Date/Publication: 2022-07-14 09:40:02 UTC -* Number of recursive dependencies: 105 - -Run `revdepcheck::cloud_details(, "portalr")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - Backtrace: - ▆ - 1. ├─portalr::bait_presence_absence(path = portal_data_path, level = "plot") at test-10-summarize_ants.R:49:2 - 2. │ ├─compute_presence(bait, level) %>% as.data.frame() - 3. │ └─portalr:::compute_presence(bait, level) - 4. │ └─... %>% ... - 5. ├─base::as.data.frame(.) - 6. ├─tidyr::complete(., !!!grouping, fill = list(presence = 0)) - 7. ├─dplyr::mutate(., presence = 1) - 8. ├─dplyr::distinct(.) - 9. └─dplyr::select(., !!!grouping) - - [ FAIL 12 | WARN 43 | SKIP 42 | PASS 17 ] - Error: Test failures - Execution halted - ``` - +*Wow, no problems at all. :)* \ No newline at end of file