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geos.cpp
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#define GEOS_USE_ONLY_R_API // prevents using non-thread-safe GEOSxx functions without _r extension.
#include <geos_c.h>
#if GEOS_VERSION_MAJOR == 3
# if GEOS_VERSION_MINOR >= 4
# define HAVE340
# endif
# if GEOS_VERSION_MINOR >= 5
# define HAVE350
# endif
# if GEOS_VERSION_MINOR == 6
# if GEOS_VERSION_PATCH >= 1
# define HAVE361
# endif
# endif
# if GEOS_VERSION_MINOR >= 7
# define HAVE361
# define HAVE370
# endif
# if GEOS_VERSION_MINOR >= 8
# define HAVE380
# endif
# if GEOS_VERSION_MINOR >= 9
# define HAVE390
# endif
# if GEOS_VERSION_MINOR == 10
# if GEOS_VERSION_PATCH >= 1
# define HAVE3101
# endif
# endif
# if GEOS_VERSION_MINOR >= 10
# define HAVE310
# define HAVE3101
# endif
# if GEOS_VERSION_MINOR >= 11
# define HAVE311
# endif
# if GEOS_VERSION_MINOR >= 12
# define HAVE312
# endif
#else
# if GEOS_VERSION_MAJOR > 3
# define HAVE340
# define HAVE350
# define HAVE370
# define HAVE361
# define HAVE380
# define HAVE390
# define HAVE310
# define HAVE3101
# define HAVE311
# endif
#endif
#include <Rcpp.h>
#include <memory>
#include <vector>
#include "wkb.h"
#include "hex.h"
typedef int (* dist_fn)(GEOSContextHandle_t, const GEOSGeometry *, const GEOSGeometry *, double *);
typedef int (* dist_parfn)(GEOSContextHandle_t, const GEOSGeometry *, const GEOSGeometry *, double, double *);
typedef char (* log_fn)(GEOSContextHandle_t, const GEOSGeometry *, const GEOSGeometry *);
typedef char (* log_prfn)(GEOSContextHandle_t, const GEOSPreparedGeometry *,
const GEOSGeometry *);
typedef GEOSGeom (* geom_fn)(GEOSContextHandle_t, const GEOSGeom, const GEOSGeom);
typedef GEOSGeom (* geom_fnp)(GEOSContextHandle_t, const GEOSGeom, const GEOSGeom, double grid_size);
static int notice = 0; // global var to silently catch notice of illegal geoms, e.g. non-closed rings
void cb(void *item, void *userdata) { // callback function for tree selection
std::vector<size_t> *ret = (std::vector<size_t> *) userdata;
ret->push_back(*((size_t *) item));
}
static void __errorHandler(const char *fmt, ...) { // #nocov start
char buf[BUFSIZ], *p;
va_list ap;
va_start(ap, fmt);
vsnprintf(buf, (size_t) BUFSIZ, fmt, ap);
va_end(ap);
p = buf + strlen(buf) - 1;
if(strlen(buf) > 0 && *p == '\n') *p = '\0';
Rcpp::Function error(".stop_geos", Rcpp::Environment::namespace_env("sf"));
error(buf);
return; // #nocov end
}
static void __warningHandler(const char *fmt, ...) {
char buf[BUFSIZ], *p;
va_list ap;
va_start(ap, fmt);
vsnprintf(buf, (size_t) BUFSIZ, fmt, ap);
va_end(ap);
p = buf + strlen(buf) - 1;
if(strlen(buf) > 0 && *p == '\n') *p = '\0';
Rcpp::Function warning("warning");
warning(buf);
return;
}
// #nocov start
static void __countErrorHandler(const char *fmt, void *userdata) {
int *i = (int *) userdata;
*i = *i + 1;
}
static void __emptyNoticeHandler(const char *fmt, void *userdata) { }
static void __checkInterruptFn(void*) {
R_CheckUserInterrupt();
}
static void __checkInterrupt() {
// Adapted from Rcpp/Interrupt.h
if (!R_ToplevelExec(__checkInterruptFn, nullptr)) {
GEOS_interruptRequest();
}
}
// #nocov end
GEOSContextHandle_t CPL_geos_init(void) {
#ifdef HAVE350
GEOSContextHandle_t ctxt = GEOS_init_r();
GEOSContext_setNoticeHandler_r(ctxt, __warningHandler);
GEOSContext_setErrorHandler_r(ctxt, __errorHandler);
GEOS_interruptRegisterCallback(__checkInterrupt);
return ctxt;
#else
return initGEOS_r((GEOSMessageHandler) __warningHandler, (GEOSMessageHandler) __errorHandler);
#endif
}
void CPL_geos_finish(GEOSContextHandle_t ctxt) {
#ifdef HAVE350
GEOS_finish_r(ctxt);
#else
finishGEOS_r(ctxt);
#endif
}
using PrepGeomPtr= std::unique_ptr<const GEOSPreparedGeometry, std::function<void(const GEOSPreparedGeometry*)> >;
using GeomPtr= std::unique_ptr<GEOSGeometry, std::function<void(GEOSGeometry*)> >;
using TreePtr= std::unique_ptr<GEOSSTRtree, std::function<void(GEOSSTRtree*)> >;
static GeomPtr geos_ptr(GEOSGeometry* g, GEOSContextHandle_t hGEOSctxt) {
auto deleter = std::bind(GEOSGeom_destroy_r, hGEOSctxt, std::placeholders::_1);
return GeomPtr(g, deleter);
}
static PrepGeomPtr geos_ptr(const GEOSPreparedGeometry* pg, GEOSContextHandle_t hGEOSctxt) {
auto deleter = std::bind(GEOSPreparedGeom_destroy_r, hGEOSctxt, std::placeholders::_1);
return PrepGeomPtr(pg, deleter);
}
static TreePtr geos_ptr(GEOSSTRtree* t, GEOSContextHandle_t hGEOSctxt) {
auto deleter = std::bind(GEOSSTRtree_destroy_r, hGEOSctxt, std::placeholders::_1);
return TreePtr(t, deleter);
}
static std::vector<GEOSGeometry*> to_raw(std::vector<GeomPtr> & g) {
std::vector<GEOSGeometry*> raw(g.size());
std::transform(g.begin(), g.end(), raw.begin(), [](GeomPtr & g) { return g.release(); });
return raw;
}
double geos_grid_size(Rcpp::List x) {
double precision = x.attr("precision");
if (precision != 0.0)
precision = 1. / precision;
return precision;
}
double geos_grid_size_xy(Rcpp::List x, Rcpp::List y) {
return std::max(geos_grid_size(x), geos_grid_size(y));
}
std::vector<GeomPtr> geometries_from_sfc(GEOSContextHandle_t hGEOSCtxt, Rcpp::List sfc, int *dim = NULL, bool stop_on_NULL = true) {
Rcpp::List sfc_cls = get_dim_sfc(sfc);
Rcpp::CharacterVector cls = sfc_cls["_cls"];
if (dim != NULL) {
Rcpp::IntegerVector sfc_dim = sfc_cls["_dim"];
if (sfc_dim.size() == 0)
Rcpp::stop("sfc_dim size 0: should not happen"); // #nocov
*dim = sfc_dim[0];
}
if (cls[0] == "XYM" || cls[0] == "XYZM")
Rcpp::stop("GEOS does not support XYM or XYZM geometries; use st_zm() to drop M\n"); // #nocov
#ifdef HAVE_390
double grid_size = geos_grid_size(sfc);
bool set_precision = grid_size != 0.0;
sfc.attr("precision") = 0.0; // so that CPL_write_wkb doesn't do the rounding;
#endif
Rcpp::List wkblst = CPL_write_wkb(sfc, true);
std::vector<GeomPtr> g(sfc.size());
GEOSWKBReader *wkb_reader = GEOSWKBReader_create_r(hGEOSCtxt);
for (int i = 0; i < sfc.size(); i++) {
Rcpp::RawVector r = wkblst[i];
g[i] = geos_ptr(GEOSWKBReader_read_r(hGEOSCtxt, wkb_reader, &(r[0]), r.size()), hGEOSCtxt);
if (g[i].get() == NULL) {
if (stop_on_NULL) {
Rcpp::Rcout << "While converting geometry of record: " << i << " to GEOS:" << std::endl;
Rcpp::stop("Illegal geometry found: fix manually, or filter out using st_is_valid() and is.na()\n");
}
}
#ifdef HAVE_390
else if (set_precision)
g[i] = geos_ptr(GEOSGeom_setPrecision_r(hGEOSCtxt, g[i].get(), grid_size, GEOS_PREC_VALID_OUTPUT), hGEOSCtxt);
#endif
}
GEOSWKBReader_destroy_r(hGEOSCtxt, wkb_reader);
return g;
}
Rcpp::List sfc_from_geometry(GEOSContextHandle_t hGEOSCtxt, std::vector<GeomPtr> & geom, int dim = 2, bool free = true) {
Rcpp::List out(geom.size());
GEOSWKBWriter *wkb_writer = GEOSWKBWriter_create_r(hGEOSCtxt);
GEOSWKBWriter_setOutputDimension_r(hGEOSCtxt, wkb_writer, dim);
// empty point, binary, with R NA's (not NaN's); GEOS can't WKB empty points,
// so we need to work around; see also https://trac.osgeo.org/postgis/ticket/3031
// > sf:::CPL_raw_to_hex(st_as_binary(st_point()))
// [1] "0101000000a20700000000f07fa20700000000f07f"
Rcpp::RawVector empty_point(CPL_hex_to_raw("0101000000a20700000000f07fa20700000000f07f")[0]);
for (size_t i = 0; i < geom.size(); i++) {
bool is_empty_point = false;
bool is_empty = GEOSisEmpty_r(hGEOSCtxt, geom[i].get()) == 1;
if (is_empty) {
char *geom_type = GEOSGeomType_r(hGEOSCtxt, geom[i].get());
is_empty_point = strcmp("Point", geom_type) == 0;
GEOSFree_r(hGEOSCtxt, geom_type);
}
if (is_empty_point)
out[i] = empty_point;
else {
size_t size;
unsigned char *buf = GEOSWKBWriter_write_r(hGEOSCtxt, wkb_writer, geom[i].get(), &size);
Rcpp::RawVector raw(size);
memcpy(&(raw[0]), buf, size);
GEOSFree_r(hGEOSCtxt, buf);
out[i] = raw;
}
}
GEOSWKBWriter_destroy_r(hGEOSCtxt, wkb_writer);
return CPL_read_wkb(out, true, false);
}
Rcpp::NumericVector get_dim(double dim0, double dim1) {
Rcpp::NumericVector dim(2);
dim(0) = dim0;
dim(1) = dim1;
return dim;
}
Rcpp::IntegerVector get_which(Rcpp::LogicalVector row) {
std::vector<int32_t> v;
for (int i = 0; i < row.length(); i++)
if (row(i))
v.push_back(i + 1);
return Rcpp::wrap(v);
}
bool chk_(char value) {
if (value == 2)
Rcpp::stop("GEOS exception"); // #nocov
return value; // 1: true, 0: false
}
log_fn which_geom_fn(const std::string op) {
if (op == "intersects")
return GEOSIntersects_r;
// else if (op == "disjoint")
// return GEOSDisjoint_r;
else if (op == "touches")
return GEOSTouches_r;
else if (op == "crosses")
return GEOSCrosses_r;
else if (op == "within")
return GEOSWithin_r;
else if (op == "contains")
return GEOSContains_r;
else if (op == "overlaps")
return GEOSOverlaps_r;
else if (op == "equals")
return GEOSEquals_r;
else if (op == "covers")
return GEOSCovers_r;
else if (op == "covered_by")
return GEOSCoveredBy_r;
Rcpp::stop("wrong value for op: please report as issue"); // unlikely to happen unless user wants to #nocov
return GEOSCoveredBy_r; // never reached; satisfy -Wreturn-type #nocov
}
log_prfn which_prep_geom_fn(const std::string op) {
if (op == "intersects")
return GEOSPreparedIntersects_r;
// else if (op == "disjoint")
// return GEOSPreparedDisjoint_r;
else if (op == "touches")
return GEOSPreparedTouches_r;
else if (op == "crosses")
return GEOSPreparedCrosses_r;
else if (op == "within")
return GEOSPreparedWithin_r;
else if (op == "contains")
return GEOSPreparedContains_r;
else if (op == "contains_properly")
return GEOSPreparedContainsProperly_r;
else if (op == "overlaps")
return GEOSPreparedOverlaps_r;
//else if (op == "equals")
// return GEOSPreparedEquals_r;
else if (op == "covers")
return GEOSPreparedCovers_r;
else if (op == "covered_by")
return GEOSPreparedCoveredBy_r;
Rcpp::stop("wrong value for op"); // unlikely to happen unless user wants to #nocov
return GEOSPreparedCoveredBy_r; // never reached; satisfy -Wreturn-type #nocov
}
/*
Rcpp::LogicalVector get_dense(std::vector<size_t> items, int length) {
Rcpp::LogicalVector rowi(length);
for (int j = 0; j < length; j++)
rowi(j) = false;
for (size_t j = 0; j < items.size(); j++)
rowi(items[j] - 1) = true; // items is 1-based
return rowi;
}
*/
// [[Rcpp::export(rng=false)]]
Rcpp::List CPL_geos_binop(Rcpp::List sfc0, Rcpp::List sfc1, std::string op, double par = 0.0,
std::string pattern = "", bool prepared = false) {
GEOSContextHandle_t hGEOSCtxt = CPL_geos_init();
std::vector<GeomPtr> gmv0 = geometries_from_sfc(hGEOSCtxt, sfc0, NULL);
std::vector<GeomPtr> gmv1 = geometries_from_sfc(hGEOSCtxt, sfc1, NULL);
Rcpp::List ret_list;
using namespace Rcpp; // so that later on the (i,_) works
if (op == "relate") { // return character matrix:
Rcpp::CharacterVector out(sfc0.length() * sfc1.length());
for (int i = 0; i < sfc0.length(); i++) {
for (int j = 0; j < sfc1.length(); j++) {
char *cp = GEOSRelate_r(hGEOSCtxt, gmv0[i].get(), gmv1[j].get());
if (cp == NULL) {
GEOSFree_r(hGEOSCtxt, cp); // #nocov
CPL_geos_finish(hGEOSCtxt); // #nocov
Rcpp::stop("GEOS error in GEOSRelate_r"); // #nocov
}
out[j * sfc0.length() + i] = cp;
GEOSFree_r(hGEOSCtxt, cp);
}
Rcpp::checkUserInterrupt();
}
out.attr("dim") = get_dim(sfc0.length(), sfc1.length());
ret_list = Rcpp::List::create(out);
} else if (op == "Euclidean" || op == "distance" || op == "Hausdorff" || op == "Frechet") { // return double matrix:
// dist_fn, dist_parfn
Rcpp::NumericMatrix out(sfc0.length(), sfc1.length());
if (par <= 0.0) {
dist_fn dist_function;
if (op == "Euclidean" || op == "distance")
dist_function = GEOSDistance_r;
else if (op == "Hausdorff")
dist_function = GEOSHausdorffDistance_r;
#ifdef HAVE370
else if (op == "Frechet")
dist_function = GEOSFrechetDistance_r;
#endif
else {
CPL_geos_finish(hGEOSCtxt); // #nocov
Rcpp::stop("distance function not supported"); // #nocov
}
for (size_t i = 0; i < gmv0.size(); i++) {
if (GEOSisEmpty_r(hGEOSCtxt, gmv0[i].get())) {
for (size_t j = 0; j < gmv1.size(); j++) // #nocov
out(i, j) = NA_REAL; // #nocov
} else for (size_t j = 0; j < gmv1.size(); j++) {
if (GEOSisEmpty_r(hGEOSCtxt, gmv1[j].get()))
out(i, j) = NA_REAL;
else {
double dist = -1.0;
if (dist_function(hGEOSCtxt, gmv0[i].get(), gmv1[j].get(), &dist) == 0) {
CPL_geos_finish(hGEOSCtxt); // #nocov
Rcpp::stop("GEOS error in GEOS_xx_Distance_r"); // #nocov
}
out(i, j) = dist;
}
}
Rcpp::checkUserInterrupt();
}
} else {
dist_parfn dist_function = NULL;
if (op == "Hausdorff")
dist_function = GEOSHausdorffDistanceDensify_r;
#ifdef HAVE370
else if (op == "Frechet")
dist_function = GEOSFrechetDistanceDensify_r;
#endif
else {
CPL_geos_finish(hGEOSCtxt); // #nocov
Rcpp::stop("distance function not supported"); // #nocov
}
for (size_t i = 0; i < gmv0.size(); i++) {
if (GEOSisEmpty_r(hGEOSCtxt, gmv0[i].get())) {
for (size_t j = 0; j < gmv1.size(); j++)
out(i, j) = NA_REAL;
} else for (size_t j = 0; j < gmv1.size(); j++) {
if (GEOSisEmpty_r(hGEOSCtxt, gmv1[j].get()))
out(i, j) = NA_REAL;
else {
double dist = -1.0;
if (dist_function(hGEOSCtxt, gmv0[i].get(), gmv1[j].get(), par, &dist) == 0) {
CPL_geos_finish(hGEOSCtxt); // #nocov
Rcpp::stop("GEOS error in GEOS_xx_Distance_r"); // #nocov
}
out(i, j) = dist;
}
}
Rcpp::checkUserInterrupt();
}
}
ret_list = Rcpp::List::create(out);
} else if (op == "is_within_distance") {
Rcpp::List sparsemat(sfc0.length());
for (size_t i = 0; i < gmv0.size(); i++) {
std::vector<size_t> sel;
for (size_t j = 0; j < gmv1.size(); j++) {
double dist = -1.0;
if (GEOSDistance_r(hGEOSCtxt, gmv0[i].get(), gmv1[j].get(), &dist) == 0) {
CPL_geos_finish(hGEOSCtxt); // #nocov
Rcpp::stop("GEOS error in GEOSDistance_r"); // #nocov
}
if (dist <= par)
sel.push_back(j + 1); // 1-based
}
sparsemat[i] = Rcpp::IntegerVector(sel.begin(), sel.end());
Rcpp::checkUserInterrupt();
}
ret_list = sparsemat;
} else if (gmv1.size()) {
// other cases: sparse matrix
Rcpp::List sparsemat(sfc0.length());
std::vector<size_t> items(gmv1.size());
TreePtr tree1 = geos_ptr(GEOSSTRtree_create_r(hGEOSCtxt, 10), hGEOSCtxt);
for (size_t i = 0; i < gmv1.size(); i++) {
items[i] = i;
if (! GEOSisEmpty_r(hGEOSCtxt, gmv1[i].get()))
GEOSSTRtree_insert_r(hGEOSCtxt, tree1.get(), gmv1[i].get(), &(items[i]));
}
if (op == "equals_exact") { // has it's own signature, needing `par':
for (int i = 0; i < sfc0.length(); i++) { // row
Rcpp::LogicalVector rowi(sfc1.length());
for (int j = 0; j < sfc1.length(); j++)
rowi(j) = chk_(GEOSEqualsExact_r(hGEOSCtxt, gmv0[i].get(), gmv1[j].get(), par));
sparsemat[i] = get_which(rowi);
Rcpp::checkUserInterrupt();
}
} else if (op == "relate_pattern") { // needing pattern
if (GEOSRelatePatternMatch_r(hGEOSCtxt, pattern.c_str(), "FF*FF****")) {
CPL_geos_finish(hGEOSCtxt);
Rcpp::stop("use st_disjoint for this pattern");
}
// all remaining can use tree:
for (int i = 0; i < sfc0.length(); i++) { // row
// pre-select sfc1's using tree:
std::vector<size_t> tree_sel, sel;
if (! GEOSisEmpty_r(hGEOSCtxt, gmv0[i].get()))
GEOSSTRtree_query_r(hGEOSCtxt, tree1.get(), gmv0[i].get(), cb, &tree_sel);
for (size_t j = 0; j < tree_sel.size(); j++)
if (chk_(GEOSRelatePattern_r(hGEOSCtxt, gmv0[i].get(), gmv1[tree_sel[j]].get(), pattern.c_str())))
sel.push_back(tree_sel[j] + 1); // 1-based
std::sort(sel.begin(), sel.end());
sparsemat[i] = Rcpp::IntegerVector(sel.begin(), sel.end());
Rcpp::checkUserInterrupt();
}
} else if (op == "disjoint") {
CPL_geos_finish(hGEOSCtxt); // #nocov
Rcpp::stop("disjoint should have been handled in R"); // #nocov
}
else { // anything else:
if (prepared) {
log_prfn logical_fn = which_prep_geom_fn(op);
for (int i = 0; i < sfc0.length(); i++) { // row
// pre-select sfc1's using tree:
std::vector<size_t> tree_sel, sel;
if (! GEOSisEmpty_r(hGEOSCtxt, gmv0[i].get()))
GEOSSTRtree_query_r(hGEOSCtxt, tree1.get(), gmv0[i].get(), cb, &tree_sel);
if (! tree_sel.empty()) {
PrepGeomPtr pr = geos_ptr(GEOSPrepare_r(hGEOSCtxt, gmv0[i].get()), hGEOSCtxt);
for (size_t j = 0; j < tree_sel.size(); j++)
if (chk_(logical_fn(hGEOSCtxt, pr.get(), gmv1[tree_sel[j]].get())))
sel.push_back(tree_sel[j] + 1); // 1-based
std::sort(sel.begin(), sel.end());
}
sparsemat[i] = Rcpp::IntegerVector(sel.begin(), sel.end());
Rcpp::checkUserInterrupt();
}
} else {
log_fn logical_fn = which_geom_fn(op);
for (int i = 0; i < sfc0.length(); i++) { // row
// pre-select sfc1's using tree:
std::vector<size_t> tree_sel, sel;
if (! GEOSisEmpty_r(hGEOSCtxt, gmv0[i].get()))
GEOSSTRtree_query_r(hGEOSCtxt, tree1.get(), gmv0[i].get(), cb, &tree_sel);
for (size_t j = 0; j < tree_sel.size(); j++)
if (chk_(logical_fn(hGEOSCtxt, gmv0[i].get(), gmv1[tree_sel[j]].get())))
sel.push_back(tree_sel[j] + 1); // 1-based
std::sort(sel.begin(), sel.end());
sparsemat[i] = Rcpp::IntegerVector(sel.begin(), sel.end());
Rcpp::checkUserInterrupt();
}
}
}
ret_list = sparsemat;
} else { // gmv1.size() == 0:
Rcpp::List sparsemat(sfc0.length());
for (size_t i = 0; i < gmv0.size(); i++)
sparsemat[i] = Rcpp::IntegerVector();
ret_list = sparsemat;
}
// clean up:
CPL_geos_finish(hGEOSCtxt);
return ret_list;
}
// [[Rcpp::export(rng=false)]]
Rcpp::CharacterVector CPL_geos_is_valid_reason(Rcpp::List sfc) {
GEOSContextHandle_t hGEOSCtxt = CPL_geos_init();
std::vector<GeomPtr> gmv = geometries_from_sfc(hGEOSCtxt, sfc, NULL, false);
Rcpp::CharacterVector out(gmv.size());
for (int i = 0; i < out.length(); i++) {
if (gmv[i].get() == NULL)
out[i] = NA_STRING;
else {
char *buf = GEOSisValidReason_r(hGEOSCtxt, gmv[i].get());
if (buf == NULL)
out[i] = NA_STRING; // #nocov
else {
out[i] = buf;
GEOSFree_r(hGEOSCtxt, buf);
}
}
}
CPL_geos_finish(hGEOSCtxt);
return out;
}
// #nocov start - no GEOS 3.8.0 on travis yet
// [[Rcpp::export(rng=false)]]
Rcpp::List CPL_geos_make_valid(Rcpp::List sfc, std::string method, bool keep_collapsed) {
GEOSContextHandle_t hGEOSCtxt = CPL_geos_init();
std::vector<GeomPtr> gmv = geometries_from_sfc(hGEOSCtxt, sfc, NULL);
std::vector<GeomPtr> out(gmv.size());
#ifdef HAVE380
# ifdef HAVE3101
GEOSMakeValidParams *makeValidParams = GEOSMakeValidParams_create_r(hGEOSCtxt);
if (method == "valid_linework")
GEOSMakeValidParams_setMethod_r(hGEOSCtxt, makeValidParams, GEOS_MAKE_VALID_LINEWORK);
else if (method == "valid_structure")
GEOSMakeValidParams_setMethod_r(hGEOSCtxt, makeValidParams, GEOS_MAKE_VALID_STRUCTURE);
else
Rcpp::stop("geos_method not recognized");
GEOSMakeValidParams_setKeepCollapsed_r(hGEOSCtxt, makeValidParams, (int) keep_collapsed);
for (size_t i = 0; i < gmv.size(); i++)
gmv[i] = geos_ptr(GEOSMakeValidWithParams_r(hGEOSCtxt, gmv[i].get(), makeValidParams), hGEOSCtxt);
GEOSMakeValidParams_destroy_r(hGEOSCtxt, makeValidParams);
# else
for (size_t i = 0; i < gmv.size(); i++)
gmv[i] = geos_ptr(GEOSMakeValid_r(hGEOSCtxt, gmv[i].get()), hGEOSCtxt);
# endif
#else
Rcpp::stop("this shouldn't happen: st_make_valid should use lwgeom");
#endif
Rcpp::List ret = sfc_from_geometry(hGEOSCtxt, gmv);
CPL_geos_finish(hGEOSCtxt);
return ret;
}
// #nocov end
// [[Rcpp::export(rng=false)]]
Rcpp::LogicalVector CPL_geos_is_valid(Rcpp::List sfc, bool NA_on_exception = true) {
GEOSContextHandle_t hGEOSCtxt = CPL_geos_init();
notice = 0;
if (NA_on_exception) {
/*
if (sfc.size() > 1)
Rcpp::stop("NA_on_exception will only work reliably with length 1 sfc objects"); // #nocov
*/
#ifdef HAVE350
GEOSContext_setNoticeMessageHandler_r(hGEOSCtxt,
(GEOSMessageHandler_r) __emptyNoticeHandler, (void *) ¬ice);
GEOSContext_setErrorMessageHandler_r(hGEOSCtxt,
(GEOSMessageHandler_r) __countErrorHandler, (void *) ¬ice);
#endif
}
Rcpp::LogicalVector out(sfc.size());
for (int i = 0; i < out.length(); i++) {
// get geometry i:
Rcpp::List geom_i = Rcpp::List::create(sfc[i]);
geom_i.attr("precision") = sfc.attr("precision");
geom_i.attr("class") = sfc.attr("class");
geom_i.attr("crs") = sfc.attr("crs");
SEXP classes = sfc.attr("classes");
if (classes != R_NilValue) {
Rcpp::CharacterVector cl = sfc.attr("classes");
geom_i.attr("classes") = cl[i];
}
std::vector<GeomPtr> gmv = geometries_from_sfc(hGEOSCtxt, geom_i, NULL, false); // where notice might be set!
int ret;
if (gmv[0].get() == NULL)
ret = 2;
else
ret = GEOSisValid_r(hGEOSCtxt, gmv[0].get());
if (NA_on_exception && (ret == 2 || notice != 0))
out[i] = NA_LOGICAL; // no need to set notice back here, as we only consider 1 geometry #nocov
else
out[i] = chk_(ret);
notice = 0; // reset notice.
}
#ifdef HAVE350
GEOSContext_setNoticeHandler_r(hGEOSCtxt, __warningHandler);
GEOSContext_setErrorHandler_r(hGEOSCtxt, __errorHandler);
#endif
CPL_geos_finish(hGEOSCtxt);
return out;
}
// [[Rcpp::export(rng=false)]]
Rcpp::LogicalVector CPL_geos_is_simple(Rcpp::List sfc) {
GEOSContextHandle_t hGEOSCtxt = CPL_geos_init();
Rcpp::LogicalVector out(sfc.length());
std::vector<GeomPtr> g = geometries_from_sfc(hGEOSCtxt, sfc, NULL);
for (size_t i = 0; i < g.size(); i++) {
out[i] = chk_(GEOSisSimple_r(hGEOSCtxt, g[i].get()));
}
CPL_geos_finish(hGEOSCtxt);
return out;
}
// [[Rcpp::export(rng=false)]]
Rcpp::LogicalVector CPL_geos_is_empty(Rcpp::List sfc) {
GEOSContextHandle_t hGEOSCtxt = CPL_geos_init();
Rcpp::LogicalVector out(sfc.length());
std::vector<GeomPtr> g = geometries_from_sfc(hGEOSCtxt, sfc, NULL);
for (size_t i = 0; i < g.size(); i++) {
out[i] = chk_(GEOSisEmpty_r(hGEOSCtxt, g[i].get()));
}
CPL_geos_finish(hGEOSCtxt);
return out;
}
// [[Rcpp::export(rng=false)]]
Rcpp::List CPL_geos_normalize(Rcpp::List sfc) { // #nocov start
int dim = 2;
GEOSContextHandle_t hGEOSCtxt = CPL_geos_init();
std::vector<GeomPtr> gmv = geometries_from_sfc(hGEOSCtxt, sfc, &dim);
for (int i = 0; i < sfc.size(); i++) {
if (GEOSNormalize_r(hGEOSCtxt, gmv[i].get()) == -1)
Rcpp::stop("normalize: GEOS exception");
}
Rcpp::List out(sfc_from_geometry(hGEOSCtxt, gmv, dim));
CPL_geos_finish(hGEOSCtxt);
out.attr("precision") = sfc.attr("precision");
out.attr("crs") = sfc.attr("crs");
return out;
} // #nocov end
// [[Rcpp::export(rng=false)]]
Rcpp::List CPL_geos_union(Rcpp::List sfc, bool by_feature = false, bool is_coverage = false) {
#ifndef HAVE380
if (is_coverage) {
Rcpp::warning("ignoring 'is_coverage = TRUE' which requires GEOS version 3.8 or greater");
is_coverage = false;
}
#endif
if (sfc.size() == 0)
return sfc; // #nocov
int dim = 2;
GEOSContextHandle_t hGEOSCtxt = CPL_geos_init();
std::vector<GeomPtr> gmv = geometries_from_sfc(hGEOSCtxt, sfc, &dim);
std::vector<GeomPtr> gmv_out(by_feature ? sfc.size() : 1);
if (by_feature) {
for (int i = 0; i < sfc.size(); i++) {
gmv_out[i] = geos_ptr(GEOSUnaryUnion_r(hGEOSCtxt, gmv[i].get()), hGEOSCtxt);
}
} else {
bool all_inputs_same = true;
// check to see if all geometries are identical, as in a call to summarize(..., do_union=TRUE)
for (size_t i = 1; i < gmv.size(); i++) {
if (!GEOSEqualsExact_r(hGEOSCtxt, gmv[0].get(), gmv[i].get(), 0.0)) {
all_inputs_same = false;
break;
}
}
if (all_inputs_same) {
gmv_out[0] = std::move(gmv[0]);
} else {
GeomPtr gc = geos_ptr(GEOSGeom_createCollection_r(hGEOSCtxt, GEOS_GEOMETRYCOLLECTION, to_raw(gmv).data(), gmv.size()), hGEOSCtxt);
#ifdef HAVE380
if (is_coverage)
gmv_out[0] = geos_ptr(GEOSCoverageUnion_r(hGEOSCtxt, gc.get()), hGEOSCtxt);
else
#endif
gmv_out[0] = geos_ptr(GEOSUnaryUnion_r(hGEOSCtxt, gc.get()), hGEOSCtxt);
}
}
Rcpp::List out(sfc_from_geometry(hGEOSCtxt, gmv_out, dim));
CPL_geos_finish(hGEOSCtxt);
out.attr("precision") = sfc.attr("precision");
out.attr("crs") = sfc.attr("crs");
return out;
}
// [[Rcpp::export(rng=false)]]
Rcpp::List CPL_geos_snap(Rcpp::List sfc0, Rcpp::List sfc1, Rcpp::NumericVector tolerance) {
int dim = 2;
GEOSContextHandle_t hGEOSCtxt = CPL_geos_init();
std::vector<GeomPtr> gmv0 = geometries_from_sfc(hGEOSCtxt, sfc0, &dim);
std::vector<GeomPtr> gmv1 = geometries_from_sfc(hGEOSCtxt, sfc1, &dim);
GeomPtr gc;
if (gmv1.size() > 1)
gc = geos_ptr(GEOSGeom_createCollection_r(hGEOSCtxt, GEOS_GEOMETRYCOLLECTION,
to_raw(gmv1).data(), gmv1.size()), hGEOSCtxt);
else
gc = std::move(gmv1[0]);
std::vector<GeomPtr> gmv_out(sfc0.size());
for (int i = 0; i < sfc0.size(); i++) {
gmv_out[i] = geos_ptr(GEOSSnap_r(hGEOSCtxt, gmv0[i].get(), gc.get(), tolerance[i]), hGEOSCtxt);
if (gmv_out[i] == NULL)
Rcpp::stop("snap: GEOS exception"); // #nocov
}
Rcpp::List out(sfc_from_geometry(hGEOSCtxt, gmv_out, dim));
CPL_geos_finish(hGEOSCtxt);
out.attr("precision") = sfc0.attr("precision");
out.attr("crs") = sfc0.attr("crs");
return out;
}
GEOSGeometry *chkNULL(GEOSGeometry *value) {
if (value == NULL)
Rcpp::stop("GEOS exception"); // #nocov
Rcpp::checkUserInterrupt();
return value;
}
// [[Rcpp::export(rng=false)]]
Rcpp::List CPL_geos_op(std::string op, Rcpp::List sfc,
Rcpp::NumericVector bufferDist, Rcpp::IntegerVector nQuadSegs,
Rcpp::NumericVector dTolerance, Rcpp::LogicalVector preserveTopology,
int bOnlyEdges = 1,
Rcpp::IntegerVector endCapStyle = 0, Rcpp::IntegerVector joinStyle = 0,
Rcpp::NumericVector mitreLimit = 1, Rcpp::LogicalVector singleside = 0)
{
int dim = 2;
GEOSContextHandle_t hGEOSCtxt = CPL_geos_init();
std::vector<GeomPtr> g = geometries_from_sfc(hGEOSCtxt, sfc, &dim);
std::vector<GeomPtr> out(sfc.length());
if (op == "buffer") {
if (bufferDist.size() != (int) g.size())
Rcpp::stop("invalid dist argument"); // #nocov
for (size_t i = 0; i < g.size(); i++)
out[i] = geos_ptr(chkNULL(GEOSBuffer_r(hGEOSCtxt, g[i].get(), bufferDist[i], nQuadSegs[i])), hGEOSCtxt);
} else if (op == "buffer_with_style") {
GEOSBufferParams *bufferparams = GEOSBufferParams_create_r(hGEOSCtxt);
for (size_t i = 0; i < g.size(); i++) {
if (GEOSBufferParams_setEndCapStyle_r(hGEOSCtxt, bufferparams, endCapStyle[i]) &&
GEOSBufferParams_setJoinStyle_r(hGEOSCtxt, bufferparams, joinStyle[i]) &&
GEOSBufferParams_setMitreLimit_r(hGEOSCtxt, bufferparams, mitreLimit[i]) &&
GEOSBufferParams_setQuadrantSegments_r(hGEOSCtxt, bufferparams, nQuadSegs[i]) &&
GEOSBufferParams_setSingleSided_r(hGEOSCtxt, bufferparams, singleside[i]))
// out[i] = geos_ptr(chkNULL(GEOSBufferWithStyle_r(hGEOSCtxt, g[i].get(), bufferDist[i], nQuadSegs[i], endCapStyle[i], joinStyle[i], mitreLimit[i])), hGEOSCtxt);
out[i] = geos_ptr(chkNULL(GEOSBufferWithParams_r(hGEOSCtxt, g[i].get(),
bufferparams, bufferDist[i])), hGEOSCtxt);
else
Rcpp::stop("invalid buffer parameters"); // #nocov
}
GEOSBufferParams_destroy_r(hGEOSCtxt, bufferparams);
} else if (op == "boundary") {
for (size_t i = 0; i < g.size(); i++)
out[i] = geos_ptr(chkNULL(GEOSBoundary_r(hGEOSCtxt, g[i].get())), hGEOSCtxt);
} else if (op == "concave_hull") {
#ifdef HAVE311
double ratio = bufferDist[0];
unsigned int allowHoles = preserveTopology[0];
for (size_t i = 0; i < g.size(); i++)
out[i] = geos_ptr(chkNULL(GEOSConcaveHull_r(hGEOSCtxt, g[i].get(), ratio, allowHoles)), hGEOSCtxt);
#else
Rcpp::stop("st_concave_hull requires GEOS >= 3.11");
#endif
} else if (op == "convex_hull") {
for (size_t i = 0; i < g.size(); i++)
out[i] = geos_ptr(chkNULL(GEOSConvexHull_r(hGEOSCtxt, g[i].get())), hGEOSCtxt);
} else if (op == "simplify") {
for (size_t i = 0; i < g.size(); i++)
out[i] = geos_ptr(
preserveTopology[i] ?
chkNULL(GEOSTopologyPreserveSimplify_r(hGEOSCtxt, g[i].get(),
dTolerance[i])) :
chkNULL(GEOSSimplify_r(hGEOSCtxt, g[i].get(), dTolerance[i])), hGEOSCtxt);
} else if (op == "linemerge") {
for (size_t i = 0; i < g.size(); i++)
out[i] = geos_ptr(chkNULL(GEOSLineMerge_r(hGEOSCtxt, g[i].get())), hGEOSCtxt);
} else if (op == "linemergedirected") {
#ifdef HAVE311
for (size_t i = 0; i < g.size(); i++)
out[i] = geos_ptr(chkNULL(GEOSLineMergeDirected_r(hGEOSCtxt, g[i].get())), hGEOSCtxt);
#else
Rcpp::stop("directed line merge requires GEOS >= 3.11");
#endif
} else if (op == "polygonize") {
for (size_t i = 0; i < g.size(); i++) {
const GEOSGeometry* gi = g[i].get();
out[i] = geos_ptr(chkNULL(GEOSPolygonize_r(hGEOSCtxt, &gi, 1)), hGEOSCtxt);
}
} else if (op == "centroid") {
for (size_t i = 0; i < g.size(); i++) {
out[i] = geos_ptr(chkNULL(GEOSGetCentroid_r(hGEOSCtxt, g[i].get())), hGEOSCtxt);
}
} else
if (op == "node") {
for (size_t i = 0; i < g.size(); i++) {
out[i] = geos_ptr(chkNULL(GEOSNode_r(hGEOSCtxt, g[i].get())), hGEOSCtxt);
}
} else if (op == "point_on_surface") {
for (size_t i = 0; i < g.size(); i++) {
out[i] = geos_ptr(chkNULL(GEOSPointOnSurface_r(hGEOSCtxt, g[i].get())), hGEOSCtxt);
}
} else
#ifdef HAVE340
if (op == "triangulate") {
for (size_t i = 0; i < g.size(); i++)
out[i] = geos_ptr(chkNULL(GEOSDelaunayTriangulation_r(hGEOSCtxt, g[i].get(),
dTolerance[i], bOnlyEdges)), hGEOSCtxt);
} else
#endif
#ifdef HAVE310
if (op == "triangulate_constrained") {
for (size_t i = 0; i < g.size(); i++)
out[i] = geos_ptr(chkNULL(GEOSConstrainedDelaunayTriangulation_r(hGEOSCtxt, g[i].get())),
hGEOSCtxt);
} else
#endif
#ifdef HAVE370
if (op == "reverse") {
for (size_t i = 0; i < g.size(); i++) {
out[i] = geos_ptr(chkNULL(GEOSReverse_r(hGEOSCtxt, g[i].get())), hGEOSCtxt);
}
} else
#endif
#ifdef HAVE380
if (op == "bounding_circle") {
double r;
for (size_t i = 0; i < g.size(); i++)
out[i] = geos_ptr(chkNULL(GEOSMinimumBoundingCircle_r(hGEOSCtxt, g[i].get(), &r, NULL)), hGEOSCtxt);
} else
#endif
#ifdef HAVE390
if (op == "inscribed_circle") {
for (size_t i = 0; i < g.size(); i++) {
out[i] = geos_ptr(chkNULL(GEOSMaximumInscribedCircle_r(hGEOSCtxt, g[i].get(),
dTolerance[i])), hGEOSCtxt);
}
} else if (op == "minimum_rotated_rectangle") {
for (size_t i = 0; i < g.size(); i++) {
out[i] = geos_ptr(chkNULL(GEOSMinimumRotatedRectangle_r(hGEOSCtxt, g[i].get())), hGEOSCtxt);
}
} else
#endif
Rcpp::stop("invalid operation"); // #nocov
Rcpp::List ret(sfc_from_geometry(hGEOSCtxt, out, dim));
CPL_geos_finish(hGEOSCtxt);
ret.attr("precision") = sfc.attr("precision");
ret.attr("crs") = sfc.attr("crs");
return ret;
}
// [[Rcpp::export(rng=false)]]
Rcpp::List CPL_geos_voronoi(Rcpp::List sfc, Rcpp::List env, double dTolerance = 0.0, int bOnlyEdges = 1) {
int dim = 2;
GEOSContextHandle_t hGEOSCtxt = CPL_geos_init();
std::vector<GeomPtr> g = geometries_from_sfc(hGEOSCtxt, sfc, &dim);
std::vector<GeomPtr> out(sfc.length());
#ifdef HAVE350
switch (env.size()) {
case 0: ;
case 1: {
std::vector<GeomPtr> g_env = geometries_from_sfc(hGEOSCtxt, env);
for (size_t i = 0; i < g.size(); i++) {
out[i] = geos_ptr(chkNULL(GEOSVoronoiDiagram_r(hGEOSCtxt, g[i].get(),
g_env.size() ? g_env[0].get() : NULL, dTolerance, bOnlyEdges)), hGEOSCtxt);
}
break;
}
default:
Rcpp::stop("env should have length 0 or 1"); // #nocov
}
#else
Rcpp::stop("voronoi diagrams require a GEOS version >= 3.5.0"); // #nocov
#endif
Rcpp::List ret(sfc_from_geometry(hGEOSCtxt, out, dim));
CPL_geos_finish(hGEOSCtxt);
ret.attr("precision") = sfc.attr("precision");
ret.attr("crs") = sfc.attr("crs");
return ret;
}
// [[Rcpp::export(rng=false)]]
Rcpp::List CPL_geos_op2(std::string op, Rcpp::List sfcx, Rcpp::List sfcy) {
using namespace Rcpp; // so that later on the (_,1) works
int dim = 2;
GEOSContextHandle_t hGEOSCtxt = CPL_geos_init();
std::vector<GeomPtr> x = geometries_from_sfc(hGEOSCtxt, sfcx, &dim);
std::vector<GeomPtr> y = geometries_from_sfc(hGEOSCtxt, sfcy, &dim);
std::vector<GeomPtr> out;
std::vector<double> index_x, index_y;
std::vector<size_t> items(x.size());
#ifdef HAVE_390
double grid_size = geos_grid_size_xy(sfcx, sfcy);
#endif
if (op == "intersection") {
bool tree_empty = true;
TreePtr tree = geos_ptr(GEOSSTRtree_create_r(hGEOSCtxt, 10), hGEOSCtxt);
for (size_t i = 0; i < x.size(); i++) {
items[i] = i;
if (! GEOSisEmpty_r(hGEOSCtxt, x[i].get())) {
GEOSSTRtree_insert_r(hGEOSCtxt, tree.get(), x[i].get(), &(items[i]));
tree_empty = false;
}
}
for (size_t i = 0; i < y.size(); i++) {
// select x's using tree:
std::vector<size_t> sel;
sel.reserve(x.size());
if (! GEOSisEmpty_r(hGEOSCtxt, y[i].get()) && ! tree_empty)
GEOSSTRtree_query_r(hGEOSCtxt, tree.get(), y[i].get(), cb, &sel);
std::sort(sel.begin(), sel.end());
for (size_t item = 0; item < sel.size(); item++) {
size_t j = sel[item];
#ifndef HAVE_390
GeomPtr geom = geos_ptr(GEOSIntersection_r(hGEOSCtxt, x[j].get(), y[i].get()), hGEOSCtxt);
#else
GeomPtr geom = geos_ptr(GEOSIntersectionPrec_r(hGEOSCtxt, x[j].get(), y[i].get(), grid_size), hGEOSCtxt);
#endif
if (geom == nullptr)
Rcpp::stop("GEOS exception"); // #nocov
if (! chk_(GEOSisEmpty_r(hGEOSCtxt, geom.get()))) {
index_x.push_back(j + 1);
index_y.push_back(i + 1);
out.push_back(std::move(geom)); // keep
}
Rcpp::checkUserInterrupt();
}