From 8e4863439024c1d89966f438e6d0e20183383f79 Mon Sep 17 00:00:00 2001
From: Tony Hirst <tony.hirst@gmail.com>
Date: Mon, 16 Jun 2025 18:08:54 +0100
Subject: [PATCH 1/4] Update JupyterLab to 4.4 and JupyterLite to 0.6

---
 environment.yml |  2 +-
 package.json    |  5 +++--
 pyproject.toml  | 14 +++++++-------
 src/index.ts    | 10 +++++-----
 4 files changed, 16 insertions(+), 15 deletions(-)

diff --git a/environment.yml b/environment.yml
index 6fcd77f..14ba230 100644
--- a/environment.yml
+++ b/environment.yml
@@ -12,4 +12,4 @@ dependencies:
   - nodejs=20
   # deps
   - jupyterlab >=4.0,<5
-  - jupyterlite-core >=0.5.0
+  - jupyterlite-core >=0.6.0
diff --git a/package.json b/package.json
index fdcb639..e1c17b7 100644
--- a/package.json
+++ b/package.json
@@ -60,8 +60,9 @@
     "watch:labextension": "jupyter labextension watch ."
   },
   "dependencies": {
-    "@jupyterlite/kernel": "^0.5.0",
-    "@jupyterlite/server": "^0.5.0",
+    "@jupyterlite/kernel": "^0.6.0",
+    "@jupyterlite/server": "^0.6.0",
+    "@jupyterlab/application": "^4.4.0",
     "hash.js": "^1.1.7",
     "webr": "^0.4.3"
   },
diff --git a/pyproject.toml b/pyproject.toml
index 667f043..eea8261 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,5 +1,5 @@
 [build-system]
-requires = ["hatchling>=1.5.0", "jupyterlab>=4.3.0,<4.4", "hatch-nodejs-version>=0.3.2"]
+requires = ["hatchling>=1.24.0", "hatch-jupyter-builder", "jupyterlab>=4.4.0,<4.5", "hatch-nodejs-version>=0.3.2"]
 build-backend = "hatchling.build"
 
 [project]
@@ -22,14 +22,14 @@ classifiers = [
   "Programming Language :: Python :: 3.12",
   "Programming Language :: Python :: 3.13",
 ]
-dependencies = ["jupyterlite-core>=0.5,<0.6"]
+dependencies = ["jupyterlite-core>=0.6,<0.7"]
 dynamic = ["version", "description", "authors", "urls", "keywords"]
 
 [project.optional-dependencies]
 dev = [
-  "jupyterlab>=4.3.0,<4.4",
+  "jupyterlab>=4.4.0,<4.5",
   "ruff==0.1.5",
-  "jupyterlite-pyodide-kernel>=0.5.2",
+  "jupyterlite-pyodide-kernel>=0.6.1",
   "pkginfo>=1.10.0",
 ]
 
@@ -51,7 +51,7 @@ exclude = [".github"]
 path = "jupyterlite_webr/_version.py"
 
 [tool.hatch.build.hooks.jupyter-builder]
-dependencies = ["hatch-jupyter-builder>=0.5"]
+dependencies = ["hatch-jupyter-builder>=0.9"]
 build-function = "hatch_jupyter_builder.npm_builder"
 ensured-targets = [
     "jupyterlite_webr/labextension/static/style.js",
@@ -79,7 +79,7 @@ version_cmd = "hatch version"
 
 [tool.jupyter-releaser.hooks]
 before-build-npm = [
-    "python -m pip install 'jupyterlab>=4.3.0,<4.4'",
+    "python -m pip install 'jupyterlab>=4.4.0,<4.5'",
     "jlpm",
     "jlpm build:prod"
 ]
@@ -116,4 +116,4 @@ ignore = [
   "S108",
   # RUF012 Mutable class attributes should be annotated with `typing.ClassVar`
   "RUF012",
-]
+]
\ No newline at end of file
diff --git a/src/index.ts b/src/index.ts
index 4d17b7d..fdbbe2c 100644
--- a/src/index.ts
+++ b/src/index.ts
@@ -1,4 +1,4 @@
-import { JupyterLiteServer, JupyterLiteServerPlugin } from '@jupyterlite/server';
+import { JupyterFrontEnd, JupyterFrontEndPlugin } from '@jupyterlab/application';
 import { IKernel, IKernelSpecs } from '@jupyterlite/kernel';
 import { PageConfig, URLExt } from '@jupyterlab/coreutils';
 import { WebRKernel } from './webr_kernel';
@@ -8,11 +8,11 @@ import type { WebROptions } from 'webr';
 
 const PLUGIN_ID = '@r-wasm/webr-kernel-extension:kernel';
 
-const server_kernel: JupyterLiteServerPlugin<void> = {
+const server_kernel: JupyterFrontEndPlugin<void> = {
   id: PLUGIN_ID,
   autoStart: true,
   requires: [IKernelSpecs],
-  activate: (app: JupyterLiteServer, kernelspecs: IKernelSpecs) => {
+  activate: (app: JupyterFrontEnd, kernelspecs: IKernelSpecs) => {
     const config = JSON.parse(
       PageConfig.getOption('litePluginSettings') || '{}'
     )[PLUGIN_ID] || {};
@@ -59,5 +59,5 @@ const server_kernel: JupyterLiteServerPlugin<void> = {
   },
 };
 
-const plugins: JupyterLiteServerPlugin<any>[] = [server_kernel];
-export default plugins;
+const plugins: JupyterFrontEndPlugin<any>[] = [server_kernel];
+export default plugins;
\ No newline at end of file

From 459d5ad0fd7cd16a7d01af615ecccdddfc29426a Mon Sep 17 00:00:00 2001
From: George Stagg <george.stagg@posit.co>
Date: Wed, 18 Jun 2025 09:57:41 +0100
Subject: [PATCH 2/4] Set browsing context ID when mounting JupyterLite

---
 .gitignore         |   3 +
 package.json       |  15 +-
 src/index.ts       |  10 +-
 src/webr_kernel.ts |   8 +-
 yarn.lock          | 751 ++++++++++++++++++++++++++++++++++-----------
 5 files changed, 601 insertions(+), 186 deletions(-)

diff --git a/.gitignore b/.gitignore
index d7b2f35..3042ba3 100644
--- a/.gitignore
+++ b/.gitignore
@@ -10,6 +10,9 @@ jupyterlite_webr/labextension
 .yarn/
 .jupyterlite.doit.db
 jupyterlite_webr/_version.py
+jupyter-lite.json
+_dev
+venv
 
 # Created by https://www.gitignore.io/api/python
 # Edit at https://www.gitignore.io/?templates=python
diff --git a/package.json b/package.json
index e1c17b7..da076dd 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@r-wasm/jupyterlite-webr-kernel",
-  "version": "0.5.2",
+  "version": "0.6.0",
   "description": "An R kernel for JupyterLite, powered by webR",
   "keywords": [
     "jupyter",
@@ -60,15 +60,15 @@
     "watch:labextension": "jupyter labextension watch ."
   },
   "dependencies": {
-    "@jupyterlite/kernel": "^0.6.0",
-    "@jupyterlite/server": "^0.6.0",
     "@jupyterlab/application": "^4.4.0",
+    "@jupyterlite/kernel": "^0.6.2",
+    "@jupyterlite/server": "^0.6.2",
     "hash.js": "^1.1.7",
     "webr": "^0.4.3"
   },
   "devDependencies": {
-    "@jupyterlab/builder": "^4.4.1",
-    "@jupyterlab/coreutils": "^6.4.0",
+    "@jupyterlab/builder": "^4.4.3",
+    "@jupyterlab/coreutils": "^6.4.3",
     "@types/uuid": "^9.0.0",
     "@typescript-eslint/eslint-plugin": "^4.8.1",
     "@typescript-eslint/parser": "^4.8.1",
@@ -104,16 +104,13 @@
       }
     }
   },
-  "jupyterlite": {
-    "liteExtension": true
-  },
   "jupyter-releaser": {
     "skip": [
       "check-links"
     ],
     "hooks": {
       "before-build-npm": [
-        "python -m pip install 'jupyterlab>=4.3.0,<5'",
+        "python -m pip install 'jupyterlab>=4.4.0,<5'",
         "jlpm"
       ]
     }
diff --git a/src/index.ts b/src/index.ts
index fdbbe2c..b7c21b8 100644
--- a/src/index.ts
+++ b/src/index.ts
@@ -5,6 +5,7 @@ import { WebRKernel } from './webr_kernel';
 import logo32 from '!!file-loader?context=.!../style/logos/r-logo-32x32.png';
 import logo64 from '!!file-loader?context=.!../style/logos/r-logo-64x64.png';
 import type { WebROptions } from 'webr';
+import { IServiceWorkerManager } from '@jupyterlite/server';
 
 const PLUGIN_ID = '@r-wasm/webr-kernel-extension:kernel';
 
@@ -12,7 +13,12 @@ const server_kernel: JupyterFrontEndPlugin<void> = {
   id: PLUGIN_ID,
   autoStart: true,
   requires: [IKernelSpecs],
-  activate: (app: JupyterFrontEnd, kernelspecs: IKernelSpecs) => {
+  optional: [IServiceWorkerManager],
+  activate: (
+    app: JupyterFrontEnd,
+    kernelspecs: IKernelSpecs,
+    serviceWorkerManager: IServiceWorkerManager | null
+  ) => {
     const config = JSON.parse(
       PageConfig.getOption('litePluginSettings') || '{}'
     )[PLUGIN_ID] || {};
@@ -53,7 +59,7 @@ const server_kernel: JupyterFrontEndPlugin<void> = {
         },
       },
       create: async (options: IKernel.IOptions): Promise<IKernel> => {
-        return new WebRKernel({ ...options }, webROptions);
+        return new WebRKernel({ ...options }, webROptions, serviceWorkerManager);
       },
     });
   },
diff --git a/src/webr_kernel.ts b/src/webr_kernel.ts
index 70f2d57..938767b 100644
--- a/src/webr_kernel.ts
+++ b/src/webr_kernel.ts
@@ -4,6 +4,7 @@ import { IKernel } from '@jupyterlite/kernel';
 
 import { Console, WebR, Shelter, WebROptions } from 'webr';
 import { RList, RCharacter, RLogical } from 'webr';
+import { IServiceWorkerManager } from '@jupyterlite/server';
 
 const protocolVersion = "5.3";
 
@@ -15,7 +16,11 @@ export class WebRKernel extends BaseKernel {
   #bitmapCanvas: HTMLCanvasElement;
   #lastPlot: string | null = null;
 
-  constructor(options: IKernel.IOptions, webROptions: WebROptions) {
+  constructor(
+    options: IKernel.IOptions,
+    webROptions: WebROptions,
+    private serviceWorkerManager: IServiceWorkerManager | null
+  ) {
     super(options);
     this.#webRConsole = new Console({
       stdout: (line: string) => console.log(line),
@@ -57,6 +62,7 @@ export class WebRKernel extends BaseKernel {
 
     // Mount Jupyterlite storage and set the CWD
     await this.webR.evalRVoid(`
+      options(webr.drivefs.browsingContextId = "${this.serviceWorkerManager?.browsingContextId}")
       webr::mount("/drive", type="DRIVEFS")
       setwd("/drive")
     `);
diff --git a/yarn.lock b/yarn.lock
index 9f3a225..f4db555 100644
--- a/yarn.lock
+++ b/yarn.lock
@@ -93,7 +93,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"@codemirror/state@npm:^6.0.0, @codemirror/state@npm:^6.2.1, @codemirror/state@npm:^6.4.0, @codemirror/state@npm:^6.5.0":
+"@codemirror/state@npm:^6.0.0, @codemirror/state@npm:^6.2.1, @codemirror/state@npm:^6.4.0, @codemirror/state@npm:^6.5.0, @codemirror/state@npm:^6.5.2":
   version: 6.5.2
   resolution: "@codemirror/state@npm:6.5.2"
   dependencies:
@@ -312,6 +312,13 @@ __metadata:
   languageName: node
   linkType: hard
 
+"@fortawesome/fontawesome-free@npm:^5.12.0":
+  version: 5.15.4
+  resolution: "@fortawesome/fontawesome-free@npm:5.15.4"
+  checksum: 32281c3df4075290d9a96dfc22f72fadb3da7055d4117e48d34046b8c98032a55fa260ae351b0af5d6f6fb57a2f5d79a4abe52af456da35195f7cb7dda27b4a2
+  languageName: node
+  linkType: hard
+
 "@humanwhocodes/config-array@npm:^0.5.0":
   version: 0.5.0
   resolution: "@humanwhocodes/config-array@npm:0.5.0"
@@ -405,6 +412,28 @@ __metadata:
   languageName: node
   linkType: hard
 
+"@jupyter/react-components@npm:^0.16.6":
+  version: 0.16.7
+  resolution: "@jupyter/react-components@npm:0.16.7"
+  dependencies:
+    "@jupyter/web-components": ^0.16.7
+    react: ">=17.0.0 <19.0.0"
+  checksum: 37894347e63ebb528725e8b8b4038d138019823f5c9e28e3f6abb93b46d771b2ee3cc004d5ff7d9a06a93f2d90e41000bd2abae14364be34ba99c5e05864810e
+  languageName: node
+  linkType: hard
+
+"@jupyter/web-components@npm:^0.16.6, @jupyter/web-components@npm:^0.16.7":
+  version: 0.16.7
+  resolution: "@jupyter/web-components@npm:0.16.7"
+  dependencies:
+    "@microsoft/fast-colors": ^5.3.1
+    "@microsoft/fast-element": ^1.12.0
+    "@microsoft/fast-foundation": ^2.49.4
+    "@microsoft/fast-web-utilities": ^5.4.1
+  checksum: ec3336247bbabb2e2587c2cf8b9d0e80786b454916dd600b3d6791bf08c3d1e45a7ec1becf366a5491ab56b0be020baa8c50a5b6067961faf5ec904de31243aa
+  languageName: node
+  linkType: hard
+
 "@jupyter/ydoc@npm:^3.0.4":
   version: 3.0.5
   resolution: "@jupyter/ydoc@npm:3.0.5"
@@ -419,9 +448,66 @@ __metadata:
   languageName: node
   linkType: hard
 
-"@jupyterlab/builder@npm:^4.4.1":
-  version: 4.4.2
-  resolution: "@jupyterlab/builder@npm:4.4.2"
+"@jupyterlab/application@npm:^4.4.0":
+  version: 4.4.3
+  resolution: "@jupyterlab/application@npm:4.4.3"
+  dependencies:
+    "@fortawesome/fontawesome-free": ^5.12.0
+    "@jupyterlab/apputils": ^4.5.3
+    "@jupyterlab/coreutils": ^6.4.3
+    "@jupyterlab/docregistry": ^4.4.3
+    "@jupyterlab/rendermime": ^4.4.3
+    "@jupyterlab/rendermime-interfaces": ^3.12.3
+    "@jupyterlab/services": ^7.4.3
+    "@jupyterlab/statedb": ^4.4.3
+    "@jupyterlab/translation": ^4.4.3
+    "@jupyterlab/ui-components": ^4.4.3
+    "@lumino/algorithm": ^2.0.3
+    "@lumino/application": ^2.4.4
+    "@lumino/commands": ^2.3.2
+    "@lumino/coreutils": ^2.2.1
+    "@lumino/disposable": ^2.1.4
+    "@lumino/messaging": ^2.0.3
+    "@lumino/polling": ^2.1.4
+    "@lumino/properties": ^2.0.3
+    "@lumino/signaling": ^2.1.4
+    "@lumino/widgets": ^2.7.1
+  checksum: 47fe9446f8bd541752cfd034243ee9da92bb8c166764fccf6d7334f0ef49135dd130831a32aa7506f72bbfc5625094fe27373151147486085c3645986ef24f4b
+  languageName: node
+  linkType: hard
+
+"@jupyterlab/apputils@npm:^4.5.3":
+  version: 4.5.3
+  resolution: "@jupyterlab/apputils@npm:4.5.3"
+  dependencies:
+    "@jupyterlab/coreutils": ^6.4.3
+    "@jupyterlab/observables": ^5.4.3
+    "@jupyterlab/rendermime-interfaces": ^3.12.3
+    "@jupyterlab/services": ^7.4.3
+    "@jupyterlab/settingregistry": ^4.4.3
+    "@jupyterlab/statedb": ^4.4.3
+    "@jupyterlab/statusbar": ^4.4.3
+    "@jupyterlab/translation": ^4.4.3
+    "@jupyterlab/ui-components": ^4.4.3
+    "@lumino/algorithm": ^2.0.3
+    "@lumino/commands": ^2.3.2
+    "@lumino/coreutils": ^2.2.1
+    "@lumino/disposable": ^2.1.4
+    "@lumino/domutils": ^2.0.3
+    "@lumino/messaging": ^2.0.3
+    "@lumino/signaling": ^2.1.4
+    "@lumino/virtualdom": ^2.0.3
+    "@lumino/widgets": ^2.7.1
+    "@types/react": ^18.0.26
+    react: ^18.2.0
+    sanitize-html: ~2.12.1
+  checksum: 02a642db18a7efb2cff01e52d5ca52fb36fcecbed678ba9379455ff00ac6e6437d03439991f9312e0d1cf89eec3018e72065eb615d747642820c7dfa5af6a33a
+  languageName: node
+  linkType: hard
+
+"@jupyterlab/builder@npm:^4.4.3":
+  version: 4.4.3
+  resolution: "@jupyterlab/builder@npm:4.4.3"
   dependencies:
     "@lumino/algorithm": ^2.0.3
     "@lumino/application": ^2.4.4
@@ -456,39 +542,75 @@ __metadata:
     worker-loader: ^3.0.2
   bin:
     build-labextension: lib/build-labextension.js
-  checksum: e88d19e12f00586c7a42c744ed242c8192dded2f8961343c6d8d325b4363b9660f85942a406ceaf4ae2ef6b98a5a9071587cff99a13907b7a7cdb18af60de015
+  checksum: b6015eff6b79e29d82506c8e7f3fc2b3a1e3282bf06a4001be43329a78daceb7b13b1bb362997725828989419f35c905b3c9577a296f5beb8b808c2a4e6de849
   languageName: node
   linkType: hard
 
-"@jupyterlab/coreutils@npm:^6.3.7, @jupyterlab/coreutils@npm:^6.4.0":
-  version: 6.4.2
-  resolution: "@jupyterlab/coreutils@npm:6.4.2"
+"@jupyterlab/codeeditor@npm:^4.4.3":
+  version: 4.4.3
+  resolution: "@jupyterlab/codeeditor@npm:4.4.3"
   dependencies:
+    "@codemirror/state": ^6.5.2
+    "@jupyter/ydoc": ^3.0.4
+    "@jupyterlab/apputils": ^4.5.3
+    "@jupyterlab/coreutils": ^6.4.3
+    "@jupyterlab/nbformat": ^4.4.3
+    "@jupyterlab/observables": ^5.4.3
+    "@jupyterlab/statusbar": ^4.4.3
+    "@jupyterlab/translation": ^4.4.3
+    "@jupyterlab/ui-components": ^4.4.3
     "@lumino/coreutils": ^2.2.1
     "@lumino/disposable": ^2.1.4
+    "@lumino/dragdrop": ^2.1.6
+    "@lumino/messaging": ^2.0.3
     "@lumino/signaling": ^2.1.4
-    minimist: ~1.2.0
-    path-browserify: ^1.0.0
-    url-parse: ~1.5.4
-  checksum: 09c65831a4a9130f2258e511eb7188ecf00052c32730425041eacbe7ebdbbf51822acbe23a46e0b267912ca07b4664580204f394379f1449bed11d1ec99cf2d1
+    "@lumino/widgets": ^2.7.1
+    react: ^18.2.0
+  checksum: edf0c26783e8db6d87805e0531557f3fe90aa4ca19d4b6c768510655f406f2cad98d06e0805e10dd1d3b94f2993fe0f2cd78fbf0d0b9005c39c1b97f57ffabb3
   languageName: node
   linkType: hard
 
-"@jupyterlab/coreutils@npm:~6.3.4":
-  version: 6.3.7
-  resolution: "@jupyterlab/coreutils@npm:6.3.7"
+"@jupyterlab/coreutils@npm:^6.4.3, @jupyterlab/coreutils@npm:~6.4.3":
+  version: 6.4.3
+  resolution: "@jupyterlab/coreutils@npm:6.4.3"
   dependencies:
-    "@lumino/coreutils": ^2.2.0
-    "@lumino/disposable": ^2.1.3
-    "@lumino/signaling": ^2.1.3
+    "@lumino/coreutils": ^2.2.1
+    "@lumino/disposable": ^2.1.4
+    "@lumino/signaling": ^2.1.4
     minimist: ~1.2.0
     path-browserify: ^1.0.0
     url-parse: ~1.5.4
-  checksum: 9daf0dded11096c896dd95fcbdd739673e2fe3fe24368f5f5017cd7e5d8701d72a24fef7b928c29d9381fdf45d6d3a9d727d7f5e11c56f069a5947010b8a96e7
+  checksum: f9ffd692d4e30f4813e4985972ff4323752dd30497877b58a8a791f71eda8655efe2297c38cb83b6b0ed057707c8bf50633d7bdd9c2d388a400d986458307cf4
+  languageName: node
+  linkType: hard
+
+"@jupyterlab/docregistry@npm:^4.4.3":
+  version: 4.4.3
+  resolution: "@jupyterlab/docregistry@npm:4.4.3"
+  dependencies:
+    "@jupyter/ydoc": ^3.0.4
+    "@jupyterlab/apputils": ^4.5.3
+    "@jupyterlab/codeeditor": ^4.4.3
+    "@jupyterlab/coreutils": ^6.4.3
+    "@jupyterlab/observables": ^5.4.3
+    "@jupyterlab/rendermime": ^4.4.3
+    "@jupyterlab/rendermime-interfaces": ^3.12.3
+    "@jupyterlab/services": ^7.4.3
+    "@jupyterlab/translation": ^4.4.3
+    "@jupyterlab/ui-components": ^4.4.3
+    "@lumino/algorithm": ^2.0.3
+    "@lumino/coreutils": ^2.2.1
+    "@lumino/disposable": ^2.1.4
+    "@lumino/messaging": ^2.0.3
+    "@lumino/properties": ^2.0.3
+    "@lumino/signaling": ^2.1.4
+    "@lumino/widgets": ^2.7.1
+    react: ^18.2.0
+  checksum: 100db7ed672fbbd8d7342fe554e34919d4d851f0728eb9da5c20043abf35f0f57cf6236f06d3ff7d106dc850f2de54ce273ca167272e1bf7e00bba308c968ca3
   languageName: node
   linkType: hard
 
-"@jupyterlab/nbformat@npm:^3.0.0 || ^4.0.0-alpha.21 || ^4.0.0, @jupyterlab/nbformat@npm:^4.3.7, @jupyterlab/nbformat@npm:^4.4.2":
+"@jupyterlab/nbformat@npm:^3.0.0 || ^4.0.0-alpha.21 || ^4.0.0":
   version: 4.4.2
   resolution: "@jupyterlab/nbformat@npm:4.4.2"
   dependencies:
@@ -497,53 +619,83 @@ __metadata:
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 "table@npm:^6.0.9":
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   resolution: "table@npm:6.9.0"
@@ -5888,7 +6281,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"tslib@npm:^1.8.1":
+"tslib@npm:^1.13.0, tslib@npm:^1.8.1":
   version: 1.14.1
   resolution: "tslib@npm:1.14.1"
   checksum: dbe628ef87f66691d5d2959b3e41b9ca0045c3ee3c7c7b906cc1e328b39f199bb1ad9e671c39025bd56122ac57dfbf7385a94843b1cc07c60a4db74795829acd
@@ -6018,6 +6411,16 @@ __metadata:
   languageName: node
   linkType: hard
 
+"typestyle@npm:^2.0.4":
+  version: 2.4.0
+  resolution: "typestyle@npm:2.4.0"
+  dependencies:
+    csstype: 3.0.10
+    free-style: 3.1.0
+  checksum: 8b4f02c24f67b594f98507b15a753dabd4db5eb0af007e1d310527c64030e11e9464b25b5a6bc65fb5eec9a4459a8336050121ecc29063ac87b8b47a6d698893
+  languageName: node
+  linkType: hard
+
 "unbox-primitive@npm:^1.1.0":
   version: 1.1.0
   resolution: "unbox-primitive@npm:1.1.0"

From 7061f255d2b910eccf7c87034cb65ad7ef9ff260 Mon Sep 17 00:00:00 2001
From: George Stagg <george.stagg@posit.co>
Date: Wed, 18 Jun 2025 16:26:33 +0100
Subject: [PATCH 3/4] Upgrade to webR v0.5.1

---
 package.json |   2 +-
 yarn.lock    | 633 ++++++++++++++++++++++++++-------------------------
 2 files changed, 318 insertions(+), 317 deletions(-)

diff --git a/package.json b/package.json
index da076dd..3dc4992 100644
--- a/package.json
+++ b/package.json
@@ -64,7 +64,7 @@
     "@jupyterlite/kernel": "^0.6.2",
     "@jupyterlite/server": "^0.6.2",
     "hash.js": "^1.1.7",
-    "webr": "^0.4.3"
+    "webr": "^0.5.1"
   },
   "devDependencies": {
     "@jupyterlab/builder": "^4.4.3",
diff --git a/yarn.lock b/yarn.lock
index f4db555..a165c62 100644
--- a/yarn.lock
+++ b/yarn.lock
@@ -58,8 +58,8 @@ __metadata:
   linkType: hard
 
 "@codemirror/language@npm:^6.0.0, @codemirror/language@npm:^6.10.3":
-  version: 6.11.0
-  resolution: "@codemirror/language@npm:6.11.0"
+  version: 6.11.1
+  resolution: "@codemirror/language@npm:6.11.1"
   dependencies:
     "@codemirror/state": ^6.0.0
     "@codemirror/view": ^6.23.0
@@ -67,7 +67,7 @@ __metadata:
     "@lezer/highlight": ^1.0.0
     "@lezer/lr": ^1.0.0
     style-mod: ^4.0.0
-  checksum: 5556dc163d5bd1d771a4f64e2750d3d1dc1f39030bc6e4b9a4704e4de7501e8d3511002e0f8f96cd8deef782730e0b49b576e30f0ea820e1c632995bd75caddd
+  checksum: 8ff27354f39fec45f2306322cd2069aeefd0162fdeec0e5b9215a3fc3fa7bc3212d133402c5f07022ee9de4bef9a69221111beed3abec42abfd246affd48ac42
   languageName: node
   linkType: hard
 
@@ -83,13 +83,13 @@ __metadata:
   linkType: hard
 
 "@codemirror/search@npm:^6.0.0":
-  version: 6.5.10
-  resolution: "@codemirror/search@npm:6.5.10"
+  version: 6.5.11
+  resolution: "@codemirror/search@npm:6.5.11"
   dependencies:
     "@codemirror/state": ^6.0.0
     "@codemirror/view": ^6.0.0
     crelt: ^1.0.5
-  checksum: a30048004ce7cc1ee77a7618485ab5399939eab72b64329d57be98245ea39cb68ba54ad944ee679cc2aeac5bf9f202b2073ad0916f0788497fb64a07073399e8
+  checksum: 4d418f176bd93705bc51c82a2f1c0e41fecc0368dc43c415635c4dfdd763aa05ebdf7f000bc9ca0083c1887e6d305b89482ec1f4db8b8765c6f38de324187476
   languageName: node
   linkType: hard
 
@@ -103,13 +103,14 @@ __metadata:
   linkType: hard
 
 "@codemirror/view@npm:^6.0.0, @codemirror/view@npm:^6.15.0, @codemirror/view@npm:^6.17.0, @codemirror/view@npm:^6.23.0, @codemirror/view@npm:^6.27.0, @codemirror/view@npm:^6.35.0":
-  version: 6.36.7
-  resolution: "@codemirror/view@npm:6.36.7"
+  version: 6.37.2
+  resolution: "@codemirror/view@npm:6.37.2"
   dependencies:
     "@codemirror/state": ^6.5.0
+    crelt: ^1.0.6
     style-mod: ^4.1.0
     w3c-keyname: ^2.2.4
-  checksum: aac0bf5e0dc244a9a4bbfab8f0ded042d776fc3c3e2ba42bad9fa2357d814e2c95636b792d582290a15c1ec9bb30e186616f07dc24dd8278da9f10721a0b469d
+  checksum: 7b203b09eac08ecd6f35604a631ddfb139c9edcff5ffc9be92a6bae3b7a2ce9998d135bb58800e7818941bb3a653e3788a4e547c438bf0c0c191a8baf9dc25d1
   languageName: node
   linkType: hard
 
@@ -120,177 +121,177 @@ __metadata:
   languageName: node
   linkType: hard
 
-"@esbuild/aix-ppc64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/aix-ppc64@npm:0.25.4"
+"@esbuild/aix-ppc64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/aix-ppc64@npm:0.25.5"
   conditions: os=aix & cpu=ppc64
   languageName: node
   linkType: hard
 
-"@esbuild/android-arm64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/android-arm64@npm:0.25.4"
+"@esbuild/android-arm64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/android-arm64@npm:0.25.5"
   conditions: os=android & cpu=arm64
   languageName: node
   linkType: hard
 
-"@esbuild/android-arm@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/android-arm@npm:0.25.4"
+"@esbuild/android-arm@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/android-arm@npm:0.25.5"
   conditions: os=android & cpu=arm
   languageName: node
   linkType: hard
 
-"@esbuild/android-x64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/android-x64@npm:0.25.4"
+"@esbuild/android-x64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/android-x64@npm:0.25.5"
   conditions: os=android & cpu=x64
   languageName: node
   linkType: hard
 
-"@esbuild/darwin-arm64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/darwin-arm64@npm:0.25.4"
+"@esbuild/darwin-arm64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/darwin-arm64@npm:0.25.5"
   conditions: os=darwin & cpu=arm64
   languageName: node
   linkType: hard
 
-"@esbuild/darwin-x64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/darwin-x64@npm:0.25.4"
+"@esbuild/darwin-x64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/darwin-x64@npm:0.25.5"
   conditions: os=darwin & cpu=x64
   languageName: node
   linkType: hard
 
-"@esbuild/freebsd-arm64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/freebsd-arm64@npm:0.25.4"
+"@esbuild/freebsd-arm64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/freebsd-arm64@npm:0.25.5"
   conditions: os=freebsd & cpu=arm64
   languageName: node
   linkType: hard
 
-"@esbuild/freebsd-x64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/freebsd-x64@npm:0.25.4"
+"@esbuild/freebsd-x64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/freebsd-x64@npm:0.25.5"
   conditions: os=freebsd & cpu=x64
   languageName: node
   linkType: hard
 
-"@esbuild/linux-arm64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/linux-arm64@npm:0.25.4"
+"@esbuild/linux-arm64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/linux-arm64@npm:0.25.5"
   conditions: os=linux & cpu=arm64
   languageName: node
   linkType: hard
 
-"@esbuild/linux-arm@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/linux-arm@npm:0.25.4"
+"@esbuild/linux-arm@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/linux-arm@npm:0.25.5"
   conditions: os=linux & cpu=arm
   languageName: node
   linkType: hard
 
-"@esbuild/linux-ia32@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/linux-ia32@npm:0.25.4"
+"@esbuild/linux-ia32@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/linux-ia32@npm:0.25.5"
   conditions: os=linux & cpu=ia32
   languageName: node
   linkType: hard
 
-"@esbuild/linux-loong64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/linux-loong64@npm:0.25.4"
+"@esbuild/linux-loong64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/linux-loong64@npm:0.25.5"
   conditions: os=linux & cpu=loong64
   languageName: node
   linkType: hard
 
-"@esbuild/linux-mips64el@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/linux-mips64el@npm:0.25.4"
+"@esbuild/linux-mips64el@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/linux-mips64el@npm:0.25.5"
   conditions: os=linux & cpu=mips64el
   languageName: node
   linkType: hard
 
-"@esbuild/linux-ppc64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/linux-ppc64@npm:0.25.4"
+"@esbuild/linux-ppc64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/linux-ppc64@npm:0.25.5"
   conditions: os=linux & cpu=ppc64
   languageName: node
   linkType: hard
 
-"@esbuild/linux-riscv64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/linux-riscv64@npm:0.25.4"
+"@esbuild/linux-riscv64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/linux-riscv64@npm:0.25.5"
   conditions: os=linux & cpu=riscv64
   languageName: node
   linkType: hard
 
-"@esbuild/linux-s390x@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/linux-s390x@npm:0.25.4"
+"@esbuild/linux-s390x@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/linux-s390x@npm:0.25.5"
   conditions: os=linux & cpu=s390x
   languageName: node
   linkType: hard
 
-"@esbuild/linux-x64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/linux-x64@npm:0.25.4"
+"@esbuild/linux-x64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/linux-x64@npm:0.25.5"
   conditions: os=linux & cpu=x64
   languageName: node
   linkType: hard
 
-"@esbuild/netbsd-arm64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/netbsd-arm64@npm:0.25.4"
+"@esbuild/netbsd-arm64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/netbsd-arm64@npm:0.25.5"
   conditions: os=netbsd & cpu=arm64
   languageName: node
   linkType: hard
 
-"@esbuild/netbsd-x64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/netbsd-x64@npm:0.25.4"
+"@esbuild/netbsd-x64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/netbsd-x64@npm:0.25.5"
   conditions: os=netbsd & cpu=x64
   languageName: node
   linkType: hard
 
-"@esbuild/openbsd-arm64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/openbsd-arm64@npm:0.25.4"
+"@esbuild/openbsd-arm64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/openbsd-arm64@npm:0.25.5"
   conditions: os=openbsd & cpu=arm64
   languageName: node
   linkType: hard
 
-"@esbuild/openbsd-x64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/openbsd-x64@npm:0.25.4"
+"@esbuild/openbsd-x64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/openbsd-x64@npm:0.25.5"
   conditions: os=openbsd & cpu=x64
   languageName: node
   linkType: hard
 
-"@esbuild/sunos-x64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/sunos-x64@npm:0.25.4"
+"@esbuild/sunos-x64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/sunos-x64@npm:0.25.5"
   conditions: os=sunos & cpu=x64
   languageName: node
   linkType: hard
 
-"@esbuild/win32-arm64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/win32-arm64@npm:0.25.4"
+"@esbuild/win32-arm64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/win32-arm64@npm:0.25.5"
   conditions: os=win32 & cpu=arm64
   languageName: node
   linkType: hard
 
-"@esbuild/win32-ia32@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/win32-ia32@npm:0.25.4"
+"@esbuild/win32-ia32@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/win32-ia32@npm:0.25.5"
   conditions: os=win32 & cpu=ia32
   languageName: node
   linkType: hard
 
-"@esbuild/win32-x64@npm:0.25.4":
-  version: 0.25.4
-  resolution: "@esbuild/win32-x64@npm:0.25.4"
+"@esbuild/win32-x64@npm:0.25.5":
+  version: 0.25.5
+  resolution: "@esbuild/win32-x64@npm:0.25.5"
   conditions: os=win32 & cpu=x64
   languageName: node
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@@ -610,16 +611,7 @@ __metadata:
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   linkType: hard
 
-"@jupyterlab/nbformat@npm:^3.0.0 || ^4.0.0-alpha.21 || ^4.0.0":
-  version: 4.4.2
-  resolution: "@jupyterlab/nbformat@npm:4.4.2"
-  dependencies:
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-  checksum: fd000acfe69c4a3884dd503d090d36f6405a23b0a03b11ee1c0fccd8507f72b2b2310594d3097c7a3a732df1ed473346ba4fb001661e73e5477fc6bafdfc68d7
-  languageName: node
-  linkType: hard
-
-"@jupyterlab/nbformat@npm:^4.4.3, @jupyterlab/nbformat@npm:~4.4.3":
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   resolution: "@jupyterlab/nbformat@npm:4.4.3"
   dependencies:
@@ -797,7 +789,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"@jupyterlite/kernel@npm:^0.6.0, @jupyterlite/kernel@npm:^0.6.2":
+"@jupyterlite/kernel@npm:^0.6.2":
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   resolution: "@jupyterlite/kernel@npm:0.6.2"
   dependencies:
@@ -826,7 +818,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"@jupyterlite/server@npm:^0.6.0":
+"@jupyterlite/server@npm:^0.6.2":
   version: 0.6.2
   resolution: "@jupyterlite/server@npm:0.6.2"
   dependencies:
@@ -1163,8 +1155,8 @@ __metadata:
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     "@jupyterlab/builder": ^4.4.3
     "@jupyterlab/coreutils": ^6.4.3
-    "@jupyterlite/kernel": ^0.6.0
-    "@jupyterlite/server": ^0.6.0
+    "@jupyterlite/kernel": ^0.6.2
+    "@jupyterlite/server": ^0.6.2
     "@types/uuid": ^9.0.0
     "@typescript-eslint/eslint-plugin": ^4.8.1
     "@typescript-eslint/parser": ^4.8.1
@@ -1181,13 +1173,13 @@ __metadata:
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     typescript: ^4.9.5
     uuid: ^9.0.0
-    webr: ^0.4.3
+    webr: ^0.5.1
   languageName: unknown
   linkType: soft
 
 "@rjsf/core@npm:^5.13.4":
-  version: 5.24.11
-  resolution: "@rjsf/core@npm:5.24.11"
+  version: 5.24.12
+  resolution: "@rjsf/core@npm:5.24.12"
   dependencies:
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     lodash-es: ^4.17.21
@@ -1197,13 +1189,13 @@ __metadata:
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     react: ^16.14.0 || >=17
-  checksum: 7bceac697e7a289fb88c6e88e78a6fc50628ebb3064d63fa7e3244a1189c6a42c582a779c52b828e8b60fdc9ff81b5468c5e60a28392061fa2eab022e6a3c2d4
+  checksum: 115bcb3e692494623b09df5808375d6b92be3ed5f72019df6673ff450851ba61de3658b494b8cdb67fad28e2a8c22d243316a15bb5a1fe7470ddd7eb891ce685
   languageName: node
   linkType: hard
 
 "@rjsf/utils@npm:^5.13.4":
-  version: 5.24.10
-  resolution: "@rjsf/utils@npm:5.24.10"
+  version: 5.24.12
+  resolution: "@rjsf/utils@npm:5.24.12"
   dependencies:
     json-schema-merge-allof: ^0.8.1
     jsonpointer: ^5.0.1
@@ -1212,7 +1204,7 @@ __metadata:
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   peerDependencies:
     react: ^16.14.0 || >=17
-  checksum: 64d9bcfea100c4b89128c20473982d316e960c01f9887fb3613bc0ecdaa9fdf8804f96ff99b0b415c2cbc7b4f7d5de941328a1a1a5d53148489d395a1f07a78e
+  checksum: 8ada729aaa4d79122d6bccce7d6f6bbdc37399d0e67dc8fe60ccd375833d262968e1033bba946bc674897df86cf6303dc7434a94daed9cbf6a0d24ac0e93c701
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@@ -1244,9 +1236,9 @@ __metadata:
   linkType: hard
 
 "@types/estree@npm:*, @types/estree@npm:^1.0.6":
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-  resolution: "@types/estree@npm:1.0.7"
-  checksum: d9312b7075bdd08f3c9e1bb477102f5458aaa42a8eec31a169481ce314ca99ac716645cff4fca81ea65a2294b0276a0de63159d1baca0f8e7b5050a92de950ad
+  version: 1.0.8
+  resolution: "@types/estree@npm:1.0.8"
+  checksum: bd93e2e415b6f182ec4da1074e1f36c480f1d26add3e696d54fb30c09bc470897e41361c8fd957bf0985024f8fbf1e6e2aff977d79352ef7eb93a5c6dcff6c11
   languageName: node
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@@ -1258,11 +1250,11 @@ __metadata:
   linkType: hard
 
 "@types/node@npm:*":
-  version: 22.15.17
-  resolution: "@types/node@npm:22.15.17"
+  version: 24.0.3
+  resolution: "@types/node@npm:24.0.3"
   dependencies:
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-  checksum: f83748c14c8ae3b7d1672af4009b892a5ae652c05c4b61c39e842711e232a0db37991611364aea9522fdf48290a8cc27403138bc479ef24ff0c9222319e7858b
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@@ -1592,6 +1584,22 @@ __metadata:
   languageName: node
   linkType: hard
 
+"@xterm/addon-fit@npm:^0.10.0":
+  version: 0.10.0
+  resolution: "@xterm/addon-fit@npm:0.10.0"
+  peerDependencies:
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+  checksum: 8edfad561c0d0316c5883cbe2ce56109f105a2b2bf53b71d5f8c788e656a3205c1093a659dddcf4025a459e4b7ff8e07b6c6a19815c8711deeded560de5f1893
+  languageName: node
+  linkType: hard
+
+"@xterm/xterm@npm:^5.5.0":
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+  resolution: "@xterm/xterm@npm:5.5.0"
+  checksum: 393c1891b95fdd50d05e7a063abdc95a6643d2c45a4231637c23db90511426a95b1b56a5c4c91831121d2710aee9de97cf5e426016c589ca87dea8fff9a41b33
+  languageName: node
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+
 "@xtuc/ieee754@npm:^1.2.0":
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+  resolution: "lightningcss-win32-x64-msvc@npm:1.30.1"
   conditions: os=win32 & cpu=x64
   languageName: node
   linkType: hard
 
 "lightningcss@npm:^1.21.5":
-  version: 1.29.3
-  resolution: "lightningcss@npm:1.29.3"
+  version: 1.30.1
+  resolution: "lightningcss@npm:1.30.1"
   dependencies:
     detect-libc: ^2.0.3
-    lightningcss-darwin-arm64: 1.29.3
-    lightningcss-darwin-x64: 1.29.3
-    lightningcss-freebsd-x64: 1.29.3
-    lightningcss-linux-arm-gnueabihf: 1.29.3
-    lightningcss-linux-arm64-gnu: 1.29.3
-    lightningcss-linux-arm64-musl: 1.29.3
-    lightningcss-linux-x64-gnu: 1.29.3
-    lightningcss-linux-x64-musl: 1.29.3
-    lightningcss-win32-arm64-msvc: 1.29.3
-    lightningcss-win32-x64-msvc: 1.29.3
+    lightningcss-darwin-arm64: 1.30.1
+    lightningcss-darwin-x64: 1.30.1
+    lightningcss-freebsd-x64: 1.30.1
+    lightningcss-linux-arm-gnueabihf: 1.30.1
+    lightningcss-linux-arm64-gnu: 1.30.1
+    lightningcss-linux-arm64-musl: 1.30.1
+    lightningcss-linux-x64-gnu: 1.30.1
+    lightningcss-linux-x64-musl: 1.30.1
+    lightningcss-win32-arm64-msvc: 1.30.1
+    lightningcss-win32-x64-msvc: 1.30.1
   dependenciesMeta:
     lightningcss-darwin-arm64:
       optional: true
@@ -4293,7 +4311,7 @@ __metadata:
       optional: true
     lightningcss-win32-x64-msvc:
       optional: true
-  checksum: 80cad5e1eb1c5eaae22ca6f17b127d65b5c93e859da124d57a90e256d7cb7802afa8dc7a6e1ec1e6aa208d0b23c8b9ec07078e69e61b10748bffdc8cadebed7e
+  checksum: cda1e15c2060ffcf8b07c2bf5489eb108a3c836c4d90c3afda7669114099b83fa0b1f28e4db380eb4cd1e7e071b06897bda82379e5981ba15258dc3103ecf507
   languageName: node
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@@ -4659,7 +4677,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"nanoid@npm:^3.3.11, nanoid@npm:^3.3.7, nanoid@npm:^3.3.8":
+"nanoid@npm:^3.3.11, nanoid@npm:^3.3.7":
   version: 3.3.11
   resolution: "nanoid@npm:3.3.11"
   bin:
@@ -4791,7 +4809,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"object-inspect@npm:^1.13.3":
+"object-inspect@npm:^1.13.3, object-inspect@npm:^1.13.4":
   version: 1.13.4
   resolution: "object-inspect@npm:1.13.4"
   checksum: 582810c6a8d2ef988ea0a39e69e115a138dad8f42dd445383b394877e5816eb4268489f316a6f74ee9c4e0a984b3eab1028e3e79d62b1ed67c726661d55c7a8b
@@ -5114,7 +5132,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"postcss@npm:^8.3.11":
+"postcss@npm:^8.3.11, postcss@npm:^8.4.33":
   version: 8.5.6
   resolution: "postcss@npm:8.5.6"
   dependencies:
@@ -5125,17 +5143,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"postcss@npm:^8.4.33":
-  version: 8.5.3
-  resolution: "postcss@npm:8.5.3"
-  dependencies:
-    nanoid: ^3.3.8
-    picocolors: ^1.1.1
-    source-map-js: ^1.2.1
-  checksum: da574620eb84ff60e65e1d8fc6bd5ad87a19101a23d0aba113c653434161543918229a0f673d89efb3b6d4906287eb04b957310dbcf4cbebacad9d1312711461
-  languageName: node
-  linkType: hard
-
 "prelude-ls@npm:^1.2.1":
   version: 1.2.1
   resolution: "prelude-ls@npm:1.2.1"
@@ -5253,14 +5260,14 @@ __metadata:
   linkType: hard
 
 "react-data-grid@npm:^7.0.0-beta.44":
-  version: 7.0.0-beta.52
-  resolution: "react-data-grid@npm:7.0.0-beta.52"
+  version: 7.0.0-beta.56
+  resolution: "react-data-grid@npm:7.0.0-beta.56"
   dependencies:
     clsx: ^2.0.0
   peerDependencies:
     react: ^19.0
     react-dom: ^19.0
-  checksum: dd6e746ea7a641c416a9cb9a6a9815f56bce9bf1a3b4d20ac2de5b388923893b79d6a4151b962fea0dd43ec0b6b4da357a919fc5b6aef3f6ad22551e13000aae
+  checksum: e576a28cdf7e82a653a80fbb726af7bdd431168f12b46e0fb1eb7f43c3ca9bbe427ef711ccd17ba0a67116f58203e54c6699fe767b8f7905a90ecd1ef9173405
   languageName: node
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@@ -5397,7 +5404,7 @@ __metadata:
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-"regexp.prototype.flags@npm:^1.5.3":
+"regexp.prototype.flags@npm:^1.5.4":
   version: 1.5.4
   resolution: "regexp.prototype.flags@npm:1.5.4"
   dependencies:
@@ -5651,11 +5658,11 @@ __metadata:
   linkType: hard
 
 "semver@npm:^7.2.1, semver@npm:^7.3.5, semver@npm:^7.5.4":
-  version: 7.7.1
-  resolution: "semver@npm:7.7.1"
+  version: 7.7.2
+  resolution: "semver@npm:7.7.2"
   bin:
     semver: bin/semver.js
-  checksum: 586b825d36874007c9382d9e1ad8f93888d8670040add24a28e06a910aeebd673a2eb9e3bf169c6679d9245e66efb9057e0852e70d9daa6c27372aab1dda7104
+  checksum: dd94ba8f1cbc903d8eeb4dd8bf19f46b3deb14262b6717d0de3c804b594058ae785ef2e4b46c5c3b58733c99c83339068203002f9e37cfe44f7e2cc5e3d2f621
   languageName: node
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@@ -5754,9 +5761,9 @@ __metadata:
   linkType: hard
 
 "shell-quote@npm:^1.6.1":
-  version: 1.8.2
-  resolution: "shell-quote@npm:1.8.2"
-  checksum: 1e97b62ced1c4c5135015978ebf273bed1f425a68cf84163e83fbb0f34b3ff9471e656720dab2b7cbb4ae0f58998e686d17d166c28dfb3662acd009e8bd7faed
+  version: 1.8.3
+  resolution: "shell-quote@npm:1.8.3"
+  checksum: 550dd84e677f8915eb013d43689c80bb114860649ec5298eb978f40b8f3d4bc4ccb072b82c094eb3548dc587144bb3965a8676f0d685c1cf4c40b5dc27166242
   languageName: node
   linkType: hard
 
@@ -5877,12 +5884,12 @@ __metadata:
   linkType: hard
 
 "socks@npm:^2.8.3":
-  version: 2.8.4
-  resolution: "socks@npm:2.8.4"
+  version: 2.8.5
+  resolution: "socks@npm:2.8.5"
   dependencies:
     ip-address: ^9.0.5
     smart-buffer: ^4.2.0
-  checksum: cd1edc924475d5dfde534adf66038df7e62c7343e6b8c0113e52dc9bb6a0a10e25b2f136197f379d695f18e8f0f2b7f6e42977bf720ddbee912a851201c396ad
+  checksum: d39a77a8c91cfacafc75c67dba45925eccfd884a8a4a68dcda6fb9ab7f37de6e250bb6db3721e8a16a066a8e1ebe872d4affc26f3eb763f4befedcc7b733b7ed
   languageName: node
   linkType: hard
 
@@ -5989,6 +5996,16 @@ __metadata:
   languageName: node
   linkType: hard
 
+"stop-iteration-iterator@npm:^1.1.0":
+  version: 1.1.0
+  resolution: "stop-iteration-iterator@npm:1.1.0"
+  dependencies:
+    es-errors: ^1.3.0
+    internal-slot: ^1.1.0
+  checksum: be944489d8829fb3bdec1a1cc4a2142c6b6eb317305eeace1ece978d286d6997778afa1ae8cb3bd70e2b274b9aa8c69f93febb1e15b94b1359b11058f9d3c3a1
+  languageName: node
+  linkType: hard
+
 "string-width-cjs@npm:string-width@^4.2.0, string-width@npm:^4, string-width@npm:^4.1.0, string-width@npm:^4.2.0, string-width@npm:^4.2.3":
   version: 4.2.3
   resolution: "string-width@npm:4.2.3"
@@ -6180,9 +6197,9 @@ __metadata:
   linkType: hard
 
 "tapable@npm:^2.1.1, tapable@npm:^2.2.0, tapable@npm:^2.2.1":
-  version: 2.2.1
-  resolution: "tapable@npm:2.2.1"
-  checksum: 3b7a1b4d86fa940aad46d9e73d1e8739335efd4c48322cb37d073eb6f80f5281889bf0320c6d8ffcfa1a0dd5bfdbd0f9d037e252ef972aca595330538aac4d51
+  version: 2.2.2
+  resolution: "tapable@npm:2.2.2"
+  checksum: 781b3666f4454eb506fd2bcd985c1994f2b93884ea88a7a2a5be956cad8337b31128a7591e771f7aab8e247993b2a0887d360a2d4f54382902ed89994c102740
   languageName: node
   linkType: hard
 
@@ -6223,16 +6240,16 @@ __metadata:
   linkType: hard
 
 "terser@npm:^5.31.1":
-  version: 5.39.0
-  resolution: "terser@npm:5.39.0"
+  version: 5.43.0
+  resolution: "terser@npm:5.43.0"
   dependencies:
     "@jridgewell/source-map": ^0.3.3
-    acorn: ^8.8.2
+    acorn: ^8.14.0
     commander: ^2.20.0
     source-map-support: ~0.5.20
   bin:
     terser: bin/terser
-  checksum: e39c302aed7a70273c8b03032c37c68c8d9d3b432a7b6abe89caf9d087f7dd94d743c01ee5ba1431a095ad347c4a680b60d258f298a097cf512346d6041eb661
+  checksum: aa2f09dfa25449088a41588eca213ddc5f44f474b0de015c7afeff651ecd0d0c46bbc41ea0f7323be7f369e95224914802ccdd9179f024d4a6acfa614e39fbd3
   languageName: node
   linkType: hard
 
@@ -6254,12 +6271,12 @@ __metadata:
   linkType: hard
 
 "tinyglobby@npm:^0.2.12":
-  version: 0.2.13
-  resolution: "tinyglobby@npm:0.2.13"
+  version: 0.2.14
+  resolution: "tinyglobby@npm:0.2.14"
   dependencies:
     fdir: ^6.4.4
     picomatch: ^4.0.2
-  checksum: 3a2e87a2518cb3616057b0aa58be4f17771ae78c6890556516ae1e631f8ce4cfee1ba1dcb62fcc54a64e2bdd6c3104f4f3d021e1a3e3f8fb0875bca380b913e5
+  checksum: 261e986e3f2062dec3a582303bad2ce31b4634b9348648b46828c000d464b012cf474e38f503312367d4117c3f2f18611992738fca684040758bba44c24de522
   languageName: node
   linkType: hard
 
@@ -6307,8 +6324,8 @@ __metadata:
   linkType: hard
 
 "tsx@npm:^4.0.0":
-  version: 4.19.4
-  resolution: "tsx@npm:4.19.4"
+  version: 4.20.3
+  resolution: "tsx@npm:4.20.3"
   dependencies:
     esbuild: ~0.25.0
     fsevents: ~2.3.3
@@ -6318,7 +6335,7 @@ __metadata:
       optional: true
   bin:
     tsx: dist/cli.mjs
-  checksum: a876a480801b17d89c8886018d9d9287230aec07eb1a9f51c5ca38d50bf832e903693d57d49a9e45926ed01ebe09a6b39f2969a6940bbdd2651df1146badc881
+  checksum: 1d13d3168d9ea44b0d02a7df16cc39be8bf4c6c309768009f392ce54e8767402d1f2d13e8dd79d0d77ef4e8a61d96ea7bad12ab1d46f1a4dadf74c4b849d798e
   languageName: node
   linkType: hard
 
@@ -6433,10 +6450,10 @@ __metadata:
   languageName: node
   linkType: hard
 
-"undici-types@npm:~6.21.0":
-  version: 6.21.0
-  resolution: "undici-types@npm:6.21.0"
-  checksum: 46331c7d6016bf85b3e8f20c159d62f5ae471aba1eb3dc52fff35a0259d58dcc7d592d4cc4f00c5f9243fa738a11cfa48bd20203040d4a9e6bc25e807fab7ab3
+"undici-types@npm:~7.8.0":
+  version: 7.8.0
+  resolution: "undici-types@npm:7.8.0"
+  checksum: 59521a5b9b50e72cb838a29466b3557b4eacbc191a83f4df5a2f7b156bc8263072b145dc4bb8ec41da7d56a7e9b178892458da02af769243d57f801a50ac5751
   languageName: node
   linkType: hard
 
@@ -6586,12 +6603,12 @@ __metadata:
   linkType: hard
 
 "watchpack@npm:^2.4.1":
-  version: 2.4.2
-  resolution: "watchpack@npm:2.4.2"
+  version: 2.4.4
+  resolution: "watchpack@npm:2.4.4"
   dependencies:
     glob-to-regexp: ^0.4.1
     graceful-fs: ^4.1.2
-  checksum: 92d9d52ce3d16fd83ed6994d1dd66a4d146998882f4c362d37adfea9ab77748a5b4d1e0c65fa104797928b2d40f635efa8f9b925a6265428a69f1e1852ca3441
+  checksum: 469514a04bcdd7ea77d4b3c62d1f087eafbce64cbc728c89355d5710ee01311533456122da7c585d3654d5bfcf09e6085db1a6eb274c4762a18e370526d17561
   languageName: node
   linkType: hard
 
@@ -6656,15 +6673,15 @@ __metadata:
   linkType: hard
 
 "webpack-sources@npm:^3.2.3":
-  version: 3.2.3
-  resolution: "webpack-sources@npm:3.2.3"
-  checksum: 989e401b9fe3536529e2a99dac8c1bdc50e3a0a2c8669cbafad31271eadd994bc9405f88a3039cd2e29db5e6d9d0926ceb7a1a4e7409ece021fe79c37d9c4607
+  version: 3.3.2
+  resolution: "webpack-sources@npm:3.3.2"
+  checksum: c0760437165b241376838b20d682f8cc6aaa4f9cf3787d3063bdb997eaf823ac3300f2b1b14a48bbebde7ce4386cabf78e5d17d632dfdef55e84c59c99c68be0
   languageName: node
   linkType: hard
 
 "webpack@npm:*, webpack@npm:^5.76.1":
-  version: 5.99.8
-  resolution: "webpack@npm:5.99.8"
+  version: 5.99.9
+  resolution: "webpack@npm:5.99.9"
   dependencies:
     "@types/eslint-scope": ^3.7.7
     "@types/estree": ^1.0.6
@@ -6695,19 +6712,21 @@ __metadata:
       optional: true
   bin:
     webpack: bin/webpack.js
-  checksum: 40388883f17bb8c68fe0cc10cf158c350a90e52495c9ae465002b83a5eb0106079f42544bd7b177fb2a79fd9cd9c63f4a5a72c71474411bdccec3cfb53a597a5
+  checksum: 5fd25e64b8d5a31919087834af3678eaee62dbf8990024fb4c71584d4beb2c3e75ecbabbcc654fa2536e0aa7900172512c674c6650acd7088e534716faa8449d
   languageName: node
   linkType: hard
 
-"webr@npm:^0.4.3":
-  version: 0.4.3
-  resolution: "webr@npm:0.4.3"
+"webr@npm:^0.5.1":
+  version: 0.5.1
+  resolution: "webr@npm:0.5.1"
   dependencies:
     "@codemirror/autocomplete": ^6.8.1
     "@codemirror/commands": ^6.2.4
     "@codemirror/state": ^6.2.1
     "@codemirror/view": ^6.15.0
     "@msgpack/msgpack": ^2.8.0
+    "@xterm/addon-fit": ^0.10.0
+    "@xterm/xterm": ^5.5.0
     classnames: ^2.2.6
     codemirror: ^6.0.1
     codemirror-lang-r: ^0.1.0-2
@@ -6724,10 +6743,8 @@ __metadata:
     react-resizable-panels: ^2.0.19
     tsx: ^4.0.0
     xmlhttprequest-ssl: ^2.1.0
-    xterm: ^5.1.0
-    xterm-addon-fit: ^0.7.0
-    xterm-readline: ^1.1.1
-  checksum: 8d7ea3f6c5aea377cc16b1a86fc433fa880cc0b1132cb4897b23294c65f004f0e423aa0e5ae6f501e51354e0ca8a818437aa739dde1fffdde37783f0bb2c2f90
+    xterm-readline: ^1.1.2
+  checksum: 88a235e102fa1e069a2b0f17e12c0412ccfcf612841c119f8c2bab180f4c8230938284e1e3978394ed79ce0058bab6ecee2036135cd4916c6d443b80da201f5c
   languageName: node
   linkType: hard
 
@@ -6795,7 +6812,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"which-typed-array@npm:^1.1.16, which-typed-array@npm:^1.1.18":
+"which-typed-array@npm:^1.1.16, which-typed-array@npm:^1.1.19":
   version: 1.1.19
   resolution: "which-typed-array@npm:1.1.19"
   dependencies:
@@ -6927,16 +6944,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"xterm-addon-fit@npm:^0.7.0":
-  version: 0.7.0
-  resolution: "xterm-addon-fit@npm:0.7.0"
-  peerDependencies:
-    xterm: ^5.0.0
-  checksum: 512d41f80d6f9427ba02dab4e6fd642e94775a9cf7ef72ae4b55eab2a36856b5c67069bfc66b4af412fdce29a0842f9c6382af3672f0b514c4352dfd47defe8f
-  languageName: node
-  linkType: hard
-
-"xterm-readline@npm:^1.1.1":
+"xterm-readline@npm:^1.1.2":
   version: 1.1.2
   resolution: "xterm-readline@npm:1.1.2"
   dependencies:
@@ -6947,13 +6955,6 @@ __metadata:
   languageName: node
   linkType: hard
 
-"xterm@npm:^5.1.0":
-  version: 5.3.0
-  resolution: "xterm@npm:5.3.0"
-  checksum: 1bdfdfe4cae4412128376180d85e476b43fb021cdd1114b18acad821c9ea44b5b600e0d88febf2b3572f38fad7741e5161ce0178a44369617cf937222cc6e011
-  languageName: node
-  linkType: hard
-
 "y-protocols@npm:^1.0.5":
   version: 1.0.6
   resolution: "y-protocols@npm:1.0.6"
@@ -7009,10 +7010,10 @@ __metadata:
   linkType: hard
 
 "yjs@npm:^13.5.40":
-  version: 13.6.26
-  resolution: "yjs@npm:13.6.26"
+  version: 13.6.27
+  resolution: "yjs@npm:13.6.27"
   dependencies:
     lib0: ^0.2.99
-  checksum: 86def6cce6410aa929d1ba62dc712d8f73261f16b4526589b5a2354c206d936bb922e28fff93391f49c23fef251d911d34475e52c7998a77be0b8536a36825c7
+  checksum: 3c934464cf28027278fa0d000568148d02af04d89d9debae7781aa50f09e20895de071120f9bd2b40faa115322a7ed8933518537344d78fb2a470e6d06df95a0
   languageName: node
   linkType: hard

From 9244b27039ef9414a3c2150ab3337bcd6c89b737 Mon Sep 17 00:00:00 2001
From: George Stagg <george.stagg@posit.co>
Date: Wed, 18 Jun 2025 16:33:36 +0100
Subject: [PATCH 4/4] Final newlines

---
 pyproject.toml | 2 +-
 src/index.ts   | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index eea8261..e9e63ab 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -116,4 +116,4 @@ ignore = [
   "S108",
   # RUF012 Mutable class attributes should be annotated with `typing.ClassVar`
   "RUF012",
-]
\ No newline at end of file
+]
diff --git a/src/index.ts b/src/index.ts
index b7c21b8..fc5977a 100644
--- a/src/index.ts
+++ b/src/index.ts
@@ -66,4 +66,4 @@ const server_kernel: JupyterFrontEndPlugin<void> = {
 };
 
 const plugins: JupyterFrontEndPlugin<any>[] = [server_kernel];
-export default plugins;
\ No newline at end of file
+export default plugins;