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Commits on Oct 13, 2020

  1. docs(SSplotComparison): improve 'shadecol' description, fix caption

    @iantaylor-NOAA
    iantaylor-NOAA committed Oct 13, 2020
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    95494b0

Commits on Oct 9, 2020

  1. Merge pull request #432 from r4ss/edit_vignette 

    Thanks for adding this @k-doering-NOAA! 
Folks who want to do as much of their model development within R or just want a reproducible record of model changes, should take a look at the expanded vignette with Kathryn's additions.
    @iantaylor-NOAA
    iantaylor-NOAA committed Oct 9, 2020
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Commits on Oct 8, 2020

  1. docs: expand vignette to include scripting workflow 

    Tested that it could compile
    @k-doering-NOAA
    k-doering-NOAA committed Oct 8, 2020
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    bf531bd

Commits on Sep 30, 2020

  1. docs(write.fwf): change \ to \\ in docs to fix warning 

    #424
    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 30, 2020
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    ed80b02

  2. tests(write.fwf): add \dontrun{} & run devtools::document() this time 

    #424
    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 30, 2020
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    2d80cfe

  3. tests(write.fwf): add \dontrun{} to example commands

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 30, 2020
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    d4a37af

  4. refactor: bring gdata::write.fwf into r4ss and remove dependency (#424)

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 30, 2020
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    c90b83d

Commits on Sep 29, 2020

  1. fix(SS_output): bug in check for wtatage option

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 29, 2020
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    3de0eee

  2. docs: update get_SIS_info.Rd using devtools::document()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 29, 2020
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    f11e151

  3. fix(SS_output): make check for new rep format robust to many comments

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 29, 2020
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    2cd0c40

  4. Merge pull request #426 from latreesedenson-NOAA/development 

    Added Gulf of Mexico specific features
    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 29, 2020
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  5. Added Gulf of Mexico specific features 

    Updated the values section of the function. Added the argument "Mgt_council." The default is "NA" and allows the function to work as it did origially for the NWFSC.  Mgt_Council ="GM' allows for Gulf of Mexico specific changes to values.
    @latreesedenson-NOAA
    latreesedenson-NOAA committed Sep 29, 2020
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    bd80dc8

Commits on Sep 28, 2020

  1. docs: increment version to 1.40.1

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 28, 2020
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    61608ea

  2. fix(SSplotPars): bug when subsetting parameters to plot

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 28, 2020
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    b506901

Commits on Sep 14, 2020

  1. style(SSplotNumbers): run styler::style_file()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 14, 2020
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    2d7044e

  2. feat(SSplotNumbers): add new "meanlines" = T/F for line on bubbles

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 14, 2020
    05efaf3

  3. test: update .travis.yml based on config warning about deprecated key 

    warning at https://travis-ci.org/github/r4ss/r4ss/jobs/727085044/config
    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 14, 2020
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    b4a989c

Commits on Sep 11, 2020

  1. Merge remote-tracking branch 'refs/remotes/origin/development' into d… 

    …evelopment
    @k-doering-NOAA
    k-doering-NOAA committed Sep 11, 2020
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    8659b4e

  2. feat: change jenkins email notifications

    @k-doering-NOAA
    k-doering-NOAA committed Sep 11, 2020
    cd77afe

  3. fix(SS_output): recent commit to use get_ncol for CompReport.sso failed

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 11, 2020
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    ee703b0

  4. build: run all models on jenkins

    @k-doering-NOAA
    k-doering-NOAA committed Sep 11, 2020
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    f85af3c

  5. fix: Dockerfile path

    @k-doering-NOAA
    k-doering-NOAA committed Sep 11, 2020
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    884c8f9

  6. build: additional files to run jenkins tests

    @k-doering-NOAA
    k-doering-NOAA committed Sep 11, 2020
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    b17a53f

  7. docs: pass "verbose" from SS_plots() to SSplotPars()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 11, 2020
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    2ffb9fd

Commits on Sep 10, 2020

  1. fix(SS_output): detect number of columns in CompReport.sso

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 10, 2020
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    de18b07

  2. style(SS_plots): apply styler::style_file()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 10, 2020
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    55a2b61

  3. docs(SS_plots): improve messages and change cat() to message()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 10, 2020
    4f966de

  4. fix: make SS_output and plots more robust to absent output

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 10, 2020
    dd55d50

Commits on Sep 8, 2020

  1. style(SSsummarize): apply styler::style_file() and devtools::document()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 8, 2020
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    3f5f165

  2. fix(SSsummarize): support absent selex output, add 'verbose' switch

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 8, 2020
    99715c3

Commits on Sep 2, 2020

  1. docs: increment to version 1.40.0, add LaTreese Denson to author list

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 2, 2020
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    57d8fff

  2. fix(SSplotPars): issue with dev parameters + used styler::style_file()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 2, 2020
    43d36cb

Commits on Sep 1, 2020

  1. feat: reduce verbosity

    @k-doering-NOAA
    k-doering-NOAA committed Sep 1, 2020
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    6b9040e

  2. docs: update documentation for get_SIS_info

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 1, 2020
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    8764d95

  3. Merge pull request #419 from latreesedenson-NOAA/development 

    Update get_SIS_info.R
Function works well for west coast stocks as well. Thanks @latreesedenson-NOAA !
    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 1, 2020
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