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Commits on Sep 29, 2020

  1. Merge pull request #425 from r4ss/development 

    merging changes over the past few weeks, not sure if it's ready for CRAN submission, but at least the master branch will be up to date
    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 29, 2020
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    119926f

  2. fix(SS_output): bug in check for wtatage option

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 29, 2020
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    3de0eee

  3. docs: update get_SIS_info.Rd using devtools::document()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 29, 2020
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    f11e151

  4. fix(SS_output): make check for new rep format robust to many comments

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 29, 2020
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    2cd0c40

  5. Merge pull request #426 from latreesedenson-NOAA/development 

    Added Gulf of Mexico specific features
    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 29, 2020
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    7168f9e

  6. Added Gulf of Mexico specific features 

    Updated the values section of the function. Added the argument "Mgt_council." The default is "NA" and allows the function to work as it did origially for the NWFSC.  Mgt_Council ="GM' allows for Gulf of Mexico specific changes to values.
    @latreesedenson-NOAA
    latreesedenson-NOAA committed Sep 29, 2020
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    bd80dc8

Commits on Sep 28, 2020

  1. docs: increment version to 1.40.1

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 28, 2020
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    61608ea

  2. fix(SSplotPars): bug when subsetting parameters to plot

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 28, 2020
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    b506901

Commits on Sep 14, 2020

  1. style(SSplotNumbers): run styler::style_file()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 14, 2020
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    2d7044e

  2. feat(SSplotNumbers): add new "meanlines" = T/F for line on bubbles

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 14, 2020
    05efaf3

  3. test: update .travis.yml based on config warning about deprecated key 

    warning at https://travis-ci.org/github/r4ss/r4ss/jobs/727085044/config
    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 14, 2020
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    b4a989c

Commits on Sep 11, 2020

  1. Merge remote-tracking branch 'refs/remotes/origin/development' into d… 

    …evelopment
    @k-doering-NOAA
    k-doering-NOAA committed Sep 11, 2020
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    8659b4e

  2. feat: change jenkins email notifications

    @k-doering-NOAA
    k-doering-NOAA committed Sep 11, 2020
    cd77afe

  3. fix(SS_output): recent commit to use get_ncol for CompReport.sso failed

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 11, 2020
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    ee703b0

  4. build: run all models on jenkins

    @k-doering-NOAA
    k-doering-NOAA committed Sep 11, 2020
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    f85af3c

  5. fix: Dockerfile path

    @k-doering-NOAA
    k-doering-NOAA committed Sep 11, 2020
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    884c8f9

  6. build: additional files to run jenkins tests

    @k-doering-NOAA
    k-doering-NOAA committed Sep 11, 2020
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    b17a53f

  7. docs: pass "verbose" from SS_plots() to SSplotPars()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 11, 2020
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    2ffb9fd

Commits on Sep 10, 2020

  1. fix(SS_output): detect number of columns in CompReport.sso

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 10, 2020
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    de18b07

  2. style(SS_plots): apply styler::style_file()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 10, 2020
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    55a2b61

  3. docs(SS_plots): improve messages and change cat() to message()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 10, 2020
    4f966de

  4. fix: make SS_output and plots more robust to absent output

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 10, 2020
    dd55d50

Commits on Sep 8, 2020

  1. style(SSsummarize): apply styler::style_file() and devtools::document()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 8, 2020
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    3f5f165

  2. fix(SSsummarize): support absent selex output, add 'verbose' switch

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 8, 2020
    99715c3

Commits on Sep 2, 2020

  1. Merge pull request #421 from r4ss/development 

    merging recent changes from development into master
    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 2, 2020
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    a250d41

  2. docs: increment to version 1.40.0, add LaTreese Denson to author list

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 2, 2020
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    57d8fff

  3. fix(SSplotPars): issue with dev parameters + used styler::style_file()

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 2, 2020
    43d36cb

Commits on Sep 1, 2020

  1. feat: reduce verbosity

    @k-doering-NOAA
    k-doering-NOAA committed Sep 1, 2020
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    6b9040e

  2. docs: update documentation for get_SIS_info

    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 1, 2020
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    8764d95

  3. Merge pull request #419 from latreesedenson-NOAA/development 

    Update get_SIS_info.R
Function works well for west coast stocks as well. Thanks @latreesedenson-NOAA !
    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 1, 2020
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    fbb943a

  4. fix: lognormal recruitment assumption in SSplotTimeseries & SSsummarize 

    issues #181 and #420
    @iantaylor-NOAA
    iantaylor-NOAA committed Sep 1, 2020
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    460bd07

Commits on Aug 31, 2020

  1. fix(SS_output): bug parsing semi-parametric selectivity parameter labels

    @iantaylor-NOAA
    iantaylor-NOAA committed Aug 31, 2020
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    32e8589

  2. fix(test-simple): working around dependency issue with expect_vector()

    @iantaylor-NOAA
    iantaylor-NOAA committed Aug 31, 2020
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    cee0fef

  3. Update get_SIS_info.R 

    -created "data_year" argument for more flexibility. Reduces potential for "bad" value lines
-increased sig figs in output
-commented out extra lines
-added output column "catch in numbers"
-spr related quantities update with choice of spr_report_basis
-fixed column alignment when spawning output units are in numbers (this should work with single sex models soon)
-did not update much in the values section of the code
    -- adjusted some to "data_year
    -- added "sciencecenter" argument
    -- more edits needed
    @latreesedenson-NOAA
    latreesedenson-NOAA committed Aug 31, 2020
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    a6e75d0

  4. style(SSplotTags): run styler::style_file() on this function

    @iantaylor-NOAA
    iantaylor-NOAA committed Aug 31, 2020
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    ca1425c
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