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rrelrates.Rproj

README.md

rrelrates

Produce relative rates on from trees using the reltime method of Tamura et al. 2012.

This package is a work in progress. Currently it is limited to primates and data available in ensembl. You can install the package via devtools

devtools::install_github("rachelss/rrelrates")

You must also install the following dependencies:

devtools::install_github("dwinter/rensembl")
source("http://bioconductor.org/biocLite.R")
biocLite(c("GO.db", "biomaRt"))

Examples

Mean and Variance of the relative rates

geneinfo("CCND1")
#> [1] "CCND1"
#> $CCND1_ENSPPYP00000003434_Pabe
#> [1] 2.232375
#> 
#> $mean
#> [1] 0.9768734
#> 
#> $var
#> [1] 0.3532899