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move from containers

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robnagler committed Feb 20, 2017
0 parents commit 74a07497183d9412ecf45bc23cbcffa9b1918b41
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sudo: required
language: bash
- docker
- master
- curl | bash -s container-build
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### Jupyter/IPython Beam Simulation Container (radiasoft/beamsim-jupyter)

See [radiasoft/container-beamsim]( for
description of codes.

### Build Info

* [Vagrant repository](
* [Docker repository](
* [Base container config: radiasoft/python2](
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# Put your bash customizations here. This will run when a terminal opens.
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build_vars() {
build_docker_cmd='["'"$tini_file"'", "--", "'"$radia_run_boot"'"]'
build_dockerfile_aux="USER $build_run_user"

build_as_root() {
# Add RPMFusion repo:
build_yum install
build_yum install
# ffmpeg for matplotlib animations
# yum-utils for yum repo management
build_yum install ffmpeg yum-utils texlive-scheme-medium
# ffmpeg was already installed from rpmfusion, disable it for future packages
yum-config-manager --disable 'rpmfusion*' > /dev/null

build_default_py2_kernel() {
local where=( $(python -m ipykernel install --display-name 'Python 2' --name "$(pyenv global)" --user) )
. ~/.pyenv/pyenv.d/exec/*synergia*.bash
update_ipy_kernel_env "${where[-1]}"

build_synergia_pre3() {
#TODO(robnagler) do this in radiasoft/beamsim/codes/
# need something to avoid hardwiring openmpi lib... PYTHONPATH is
# also not right, but we control everything here so probably ok.
pip install -U 'git+git://'
pip install -U 'git+git://'
local venv=synergia-pre3
pyenv virtualenv 2.7.10 "$venv"
pyenv activate "$venv"
# pykern brings in a lot of requirements to simplify build times
pip install pykern
build_curl | codes_synergia_branch=devel-pre3 bash -s master code synergia
pip install -U 'git+git://'
pip install -U 'git+git://'
local where=( $(python -m ipykernel install --display-name 'Python 2 synergia-pre3' --name "$venv" --user) )
. ~/.pyenv/pyenv.d/exec/*synergia*.bash
update_ipy_kernel_env "${where[-1]}"
# Test with: ipython notebook --no-browser --ip='*'

build_rsbeams_style() {
cd /tmp
git clone
for src in rsbeams/rsbeams/matplotlib/stylelib/*; do
dst=~/.config/matplotlib/$(basename "$src")
cp -a "$src" "$dst"
rm -rf rsbeams

build_jupyter() {
# update python-build
pyenv update || true

local pyver=3.5.2

pyenv install "$pyver"
pyenv virtualenv "$pyver" "$jupyter_venv"
pyenv activate "$jupyter_venv"

pip install --upgrade pip
pip install --upgrade setuptools
# Since the Terminado Settings has not been merged into any release, we are have your
# own fork with the changes applied to the latest release.
pip install --upgrade --no-deps git+
pip install jupyter jupyterlab jupyterhub

jupyter serverextension enable --py jupyterlab --sys-prefix

build_as_run_user() {
cd "$build_guest_conf"
local notebook_dir_base=jupyter
export notebook_dir=$build_run_user_home/$notebook_dir_base
export boot_dir
export notebook_bashrc="$notebook_dir_base/bashrc"
export notebook_template_dir="$boot_dir/$notebook_dir_base"
export jupyter_venv=jupyter


# POSIT: notebook_dir in salt-conf/srv/pillar/jupyterhub/base.yml
mkdir -p ~/.jupyter "$notebook_dir" "$notebook_template_dir"
build_replace_vars ~/.jupyter/
build_replace_vars "$radia_run_boot"
chmod +x "$radia_run_boot"
build_curl > "$tini_file"
chmod +x "$tini_file"
local f
for f in bashrc requirements.txt; do
build_replace_vars "$f" "$notebook_template_dir/$f"
build_replace_vars post_bivio_bashrc ~/.post_bivio_bashrc
. ~/.bashrc


update_ipy_kernel_env() {
local where="$1"
perl -pi -e 'sub _e {join(qq{,\n},
map(qq{ "$_": "$ENV{$_}"},
s/^\{/{\n "env": {\n@{[_e()]}\n },/' "$where/kernel.json"

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c.KernelSpecManager.whitelist = {'synergia-pre3', 'py2'}

c.NotebookApp.terminado_settings = {
'shell_command': ['/bin/bash', '-l', '-i'],
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# Avoid: "pyenv-virtualenv: prompt changing will be removed from future release."

export LC_ALL=en_US.UTF-8
export LANG=en_US.UTF-8
export LANGUAGE=en_US.UTF-8

# Fixups for Bivio environment running in terminado.
# We don't want PROMPT_COMMAND for anything
if [[ -n $PS1 ]]; then
export PS1='\W$ '
export TERM=xterm

if [[ -f ~/'{notebook_bashrc}' ]]; then
. ~/'{notebook_bashrc}'

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