Pinned repositories

  1. networkscompbio

    Code for the class CS 446/546 - Networks in computational biology

    Jupyter Notebook 1 3

  2. cerenkov

    Computational Elucidation of the REgulatory NonKOding Variome

    Python

  3. Dizzy

    Framework for stochastic kinetic modeling of biochemical reaction networks (Java code)

    Java 1

  • Computational Elucidation of the REgulatory NonKOding Variome

    Python Apache-2.0 Updated Jul 2, 2018
  • Manage Ramsey Lab EC2 instances

    Python Apache-2.0 Updated May 23, 2018
  • Framework for stochastic kinetic modeling of biochemical reaction networks (Java code)

    Java 1 Updated Apr 25, 2018
  • Ramsey Lab's open notes on bioinformatics and computational biology

    Apache-2.0 Updated Apr 25, 2018
  • DNA shape-based classifier for regulatory elements (R package)

    R 4 1 GPL-2.0 Updated Feb 28, 2018
  • Piecewise-linear machine-learning model for motif-based prediction of transcription factor binding sites

    Matlab Apache-2.0 Updated Feb 28, 2018
  • Regulatory network reconstruction via time-lagged correlation analysis of gene expression and motif scanning data

    Matlab Apache-2.0 Updated Dec 14, 2017
  • Code for the class CS 446/546 - Networks in computational biology

    Jupyter Notebook 1 3 Apache-2.0 Updated Dec 9, 2017
  • Bayesian method for transcription factor binding site enrichment analysis

    R 1 Apache-2.0 Updated Sep 10, 2016
  • Statistical testing for overlap between expression quantitative trait loci and transcription factor location data (R code)

    R Apache-2.0 Updated Aug 15, 2016
  • Analyze disease genes vs. transcriptome data, for in silico screening for drug repositioning (R code)

    R Apache-2.0 Updated Feb 17, 2016