Skip to content
master
Go to file
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
 
 
 
 

README.md

pltfbsmotif

Piecewise-linear machine-learning model for motif-based prediction of transcription factor binding sites

This repository contains the MATLAB code for a piecewise-linear, data-fusion model for motif-based prediction of transcription factor binding sites. The code was used in the analysis published in the 2010 article Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites (Ramsey et al., Bioinform., 2010).

The MATLAB code in this project was written by Stephen Ramsey (@saramsey) except for six contributed modules:

  • PSWM_MotifLocator.m, BM_Scan.m, basepairs2num.m, readfastaseqs.m: Harri Lähdesmäki (personal communication)
  • readbar.m, writebar.m: Matti Nykter (personal communication)

The contributions of Dr. Lähdesmäki and Dr. Nykter to this project are gratefully acknowledged.

Requirements

About

Piecewise-linear machine-learning model for motif-based prediction of transcription factor binding sites

Resources

License

Packages

No packages published

Languages

You can’t perform that action at this time.