@matthewreyna matthewreyna released this Jan 18, 2018 · 2 commits to master since this release

Assets 2
  • Minor updates
  • Performance improvements

@matthewreyna matthewreyna released this Jan 1, 2018 · 5 commits to master since this release

Assets 2
  • Breaking changes.
  • Simplified interface.
  • Added consensus statistical test.
  • Updated visualizations.
  • Accumulated performance improvements.

@matthewreyna matthewreyna released this Jan 1, 2018 · 54 commits to master since this release

Assets 2
  • Accumulated updates and performance improvements.

@mdml mdml released this Jun 24, 2015 · 130 commits to master since this release

Assets 2
  • Update influence matrices to be stored/loaded as HDF5 by default.
  • Fix transpose error in generating influence matrices.
  • Small bug fixes to visualization.

@jveldridge jveldridge released this Dec 12, 2014 · 164 commits to master since this release

Assets 2

Initial non-beta release of HotNet2 associated with the publication of:

M.D.M. Leiserson, F. Vandin, H.T. Wu, J.R. Dobson, J.V. Eldridge, J.L. Thomas, A. Papoutsaki, Y. Kim, B. Niu, M. McLellan, M.S. Lawrence, A.G. Perez, D. Tamborero, Y. Cheng, G.A. Ryslik, N. Lopez-Bigas, G. Getz, L. Ding, and B.J. Raphael. (2014) Pan-Cancer Network Analysis Identifies Combinations of Rare Somatic Mutations across Pathways and Protein Complexes. Nature Genetics. In press.

This release supports running both HotNet2 as well as the classic HotNet algorithm and contains significant
performance and output visualization improvements over previous versions.

@jveldridge jveldridge released this Feb 8, 2014 · 431 commits to master since this release

Assets 2

Fixes visualization bugs.

@raphael-group raphael-group released this Jan 10, 2014 · 431 commits to master since this release

Assets 2
v0.0.1-beta

Fixed formatting in example/README.md