/wext

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v1.3.0: Additional test statistics and accumulated updates
Latest release

@matthewreyna matthewreyna released this Jan 3, 2018

Assets 2
  • Add arbitrary test statistics to new find_sets.py script, including predefined exclusivity, any co-occurrence, and all co-occurrence statistics -- see the WExT wiki for details.
  • Add more accessible random seed to compute_mutation_probabilities.py script for mutation matrix permutations.
  • Add optional FDR threshold to new find_sets.py script to limit output to statistically significant sets.
  • Add additional examples, including those for new test statistics.
  • Update documentation.
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v1.2.0: Accumulated updates since ECCB/Bioinformatics 2016 release

@matthewreyna matthewreyna released this Nov 16, 2017 · 1 commit to master since this release

Assets 2

This version of WExT includes accumulated updates after the last release, including

  • bug fixes,
  • a more accurate mutation probability/weight matrix,
  • new examples, and
  • documentation updates.
1.1.0: Experiments for camera-ready ECCB/Bioinformatics 2016

@mdml mdml released this Jun 22, 2016 · 19 commits to master since this release

Assets 2
  • Use Fortran to generate permuted matrices
  • Rename tests: "weighted" -> "WRE", "unweighted" -> "RE", "permutational" -> "RCE"
  • Update experiments to use renaming and to match new table/figure numbers
  • Other, minor changes
1.0.0: ECCB 2016 submission

@mdml mdml released this May 12, 2016 · 51 commits to master since this release

Assets 2

Initial release of the weighted exclusivity test code, including a script of commands for reproducing the experiments from the ECCB 2016 submission.