- Add arbitrary test statistics to new
find_sets.pyscript, including predefined exclusivity, any co-occurrence, and all co-occurrence statistics -- see the WExT wiki for details. - Add more accessible random seed to
compute_mutation_probabilities.pyscript for mutation matrix permutations. - Add optional FDR threshold to new
find_sets.pyscript to limit output to statistically significant sets. - Add additional examples, including those for new test statistics.
- Update documentation.
Assets
2
This version of WExT includes accumulated updates after the last release, including
- bug fixes,
- a more accurate mutation probability/weight matrix,
- new examples, and
- documentation updates.
Assets
2
- Use Fortran to generate permuted matrices
- Rename tests: "weighted" -> "WRE", "unweighted" -> "RE", "permutational" -> "RCE"
- Update experiments to use renaming and to match new table/figure numbers
- Other, minor changes
Assets
2
Initial release of the weighted exclusivity test code, including a script of commands for reproducing the experiments from the ECCB 2016 submission.