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Clojure library to read SAM/BAM files using SAM-JDK
Clojure
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examples
src/bio/sam
test/bio/sam
README
project.clj

README

# bio.sam

Clojure interface to SAM-JDK. Just at proof of concept stage, provides function
to read SAM/BAM files and return lazy-seq of SAMRecord objects.

## Usage

(use '[bio.sam.core :only (read-sam)])

(def s (read-sam "examples/toy.sam"))

(map (memfn getReadString) s)

## Installation

FIXME: write

## See also

http://picard.sourceforge.net/

## License

Copyright (C) 2010, Ray Miller <ray@1729.org.uk>.

THE ACCOMPANYING PROGRAM IS PROVIDED UNDER THE TERMS OF THIS ECLIPSE
PUBLIC LICENSE, <http://www.eclipse.org/org/documents/epl-v10.php>.

ANY USE, REPRODUCTION OR DISTRIBUTION OF THE PROGRAM CONSTITUTES
RECIPIENT’S ACCEPTANCE OF THIS AGREEMENT.

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