You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Is this repository still pre-release? I'm attempting to build a Singularity container - the script appears to have gotten as far as the install of RStudio before encountering the following problem:
Installing BiocManager [1.30.16] ...
OK [built from source]
Copying BiocManager [1.30.16] into the cache ...
OK [copied 25 files in 0.011 seconds]
Error: failed to determine Bioconductor repositories
Traceback (most recent calls last):
9: renv::restore(prompt = FALSE)
8: renv_restore_run_actions(project, diff, current, lockfile, rebuild)
7: renv_retrieve(packages)
6: handler(package, renv_retrieve_impl(package))
5: renv_retrieve_impl(package)
4: renv_scope_bioconductor()
3: renv_bioconductor_repos()
2: stopf("failed to determine Bioconductor repositories")
1: stop(sprintf(fmt, ...), call. = call.)
Execution halted
FATAL: failed to execute %post proc: exit status 1
FATAL: While performing build: while running engine: while running /usr/local/libexec/singularity/bin/starter: exit status 255
Any ideas?
The text was updated successfully, but these errors were encountered:
This is still pre-release. We've gotten side tracked working on other things but will eventually return to this. In the meantime, its possible that @paupaiz could provide some input but it isnt our intention to support this repository yet.
Hi @rcorces,
Is this repository still pre-release? I'm attempting to build a Singularity container - the script appears to have gotten as far as the install of RStudio before encountering the following problem:
Installing BiocManager [1.30.16] ...
OK [built from source]
Copying BiocManager [1.30.16] into the cache ...
OK [copied 25 files in 0.011 seconds]
Error: failed to determine Bioconductor repositories
Traceback (most recent calls last):
9: renv::restore(prompt = FALSE)
8: renv_restore_run_actions(project, diff, current, lockfile, rebuild)
7: renv_retrieve(packages)
6: handler(package, renv_retrieve_impl(package))
5: renv_retrieve_impl(package)
4: renv_scope_bioconductor()
3: renv_bioconductor_repos()
2: stopf("failed to determine Bioconductor repositories")
1: stop(sprintf(fmt, ...), call. = call.)
Execution halted
FATAL: failed to execute %post proc: exit status 1
FATAL: While performing build: while running engine: while running /usr/local/libexec/singularity/bin/starter: exit status 255
Any ideas?
The text was updated successfully, but these errors were encountered: