LOCUS NOLA1 7316 bp RNA linear 20-MAY-2021 DEFINITION (USA/2016). ACCESSION VERSION KEYWORDS . SOURCE Enterovirus J ORGANISM Enterovirus J Unclassified. REFERENCE 1 (bases 1 to 7316) AUTHORS Zhao,G., Droit,L., Gilbert,M.H., Schiro,F.R., Didier,P.J., Si,X., Paredes,A., Handley,S.A., Virgin,H.W., Bohm,R.P. and Wang,D. TITLE Virome biogeography in the lower gastrointestinal tract of rhesus macaques with chronic diarrhea JOURNAL Virology 527, 77-88 (2019) PUBMED 30468938 REFERENCE 2 (bases 1 to 7316) AUTHORS Wang,D., Handley,S.A., Tahan,S., Zhao,G., Droit,L., Gilbert,M.H., Schiro,F.R., Didier,P.J., Si,X., Paredes,A., Virgin,H.W., Bohm,R.P. and Mihindukulasuriya,K.A. TITLE Direct Submission JOURNAL Submitted (20-MAY-2021) Department of Pathology & Immunology, Washington University in St. Louis, 4523 Clayton Avenue, St. Louis, MO 63110, USA COMMENT ##Assembly-Data-START## Created with VAPiDv1.6.6 Reference annotations were pulled from FJ007373.1 ##Assembly-Data-END##. FEATURES Location/Qualifiers source 1..7316 /organism="Enterovirus J" /mol_type="genomic RNA" /strain="NOLA1" /host="Homo sapiens" /country="USA" /collection_date="2016" CDS 678..7217 /codon_start=1 /product="polyprotein" /translation="MGAQVSRQQTGSHETNAIATGGSTIHYTNINYYKDSYAASATKQ DFSQDPSKFTQPVVDALQASSVPLKSPSAEACGYSDRVLQLTYGNTTITTQEAANVVV GYGQWPEHLGPRDANSVDAPTKPDVATNRFYTLQAKKWEATSKGWYWKLPDCLNDLGV FGQNCWYHFLYRGGWAIHVQCNASKFHQGTLLVVAIPEWTQGRGLDTSGTRTYMEYNQ VMPGESGALFNTPEWLDNGTIISQALLFPHQWINLRTNNSATLILPYMNNIPADSPIR HNNWTLAVIPVCELQFSTGATTLVPITVSIAPLCAEFDGLRQAVSQGLPVRLTPASNQ FMTTSDDCVEGILPDFHSTPEIKIPGEVKNLLECAQVETMLMVNNVNGVNGMKRFTIP VSAQSDVDQQIMALKVDPGSDGPWQATYLGQLCRYYNNWSGSLEMTFMFCGSFMATGK VLIAYSPPGGSAPTTRKDAMLGTHVVWDFGLQSSITLSIPWISNTCMRNVASLAYQDY FAAGYVTMWYQTNFVVPAGAPTSAQIIALAAARPNFVLRLLKDSDQISQSAVLNGPVE DAINTTVTKLIGTAADTVASGPHQGDAVPALQAAETGATSTADDSGMIETRTVYNHNS IAETGVESFYSRSGLVGMVSLIRSGAESTNSFTTWNIDTMGFVQQRRKLELFTYMRFD AEFTLVITQDNAAEFPQLVVQYMYIPPGSPLPKTVDSYLWQSGTNPSIFVKTTDPPAQ FSIPFMSTCAAYAWFYDGYPSFGRPSETGGRGSISYGVLPPNMFGTLAFRMVGSSQNT NLRVRIYMKPKHVKCWGPRPMRMLPYVEKNRPSYSKTAKPIADRTSITTVGKFGQQSG AVYVGNYRIVNRHLANEFDAQSTVWESYERDLLVSTTTAHGCDTIARCKCNTGVYFCR SKGKHYPVCFQGPGLTWIEANEYYPARYQSHVLLASGPAEPGDCGGILRCQHGVIGIV TAGGNGLVAFADLRDLLWLEDDAMEQGIADYVAQLGQAFGSGFTNEIAEKTQQIKDML IGQDSILEKCLKALIKIVSALVIIVRNHEDLVTVTATLALIGCSGSPWQWLKTKICQY LQIPTVEKQGDSWLKKFTEATNAAKGLEWIAQKISKFIDWLKTKIVPEVKEKVQFLDK LKQLPLIESQVTSIEHSAPSQDDQEKLHGNIQYLAHYCRRYAPLYATEARRVFALEKK MNNYMQFKTKSRIEPVCLLIHGTPGAGKSIASSLIGRAIAEKLHSCVYSLPPDPDHFD GYKQQAVVIMDDLCQNPDGKDVSLLCQMVSTVDFIPPMASLEEKGILYTSPFMIASTN HGSITAPTISDSRALNRRFYLDVDIVINDDYKLNNKLNMQLACQHCSNCDPANFKHCC PLVCGRAIQFIDRRTNVRYTLDMLVTEMFREYNHRNSIGNVLEALFQGPPVFRDLKIS VDPETPAPPAIADLLKSVDSEEVREYCKNKGWIIPVTECQTERHLSRALTILQAISTF VAVAGCIYIVYKLFAGFQGAYTGLPFNKPKVPTIRQAKVQGPSFEFAVAMMKRNSAII KTGQGEFTMLGIWDKWAVVPRHAKPGDTVIVDDKELRVLDAKELVDPEGVNLELTMIK LDRNEKFRDIRGFIPKESGELSEAVLAINTSKFPNMFIPVGAVKEYGFLNLSGTPTHR MLMYNFPTKSGQCGGVLMATGKVIGIHVGGNGHQGFAATLLRDYFAEEQGEIEWMETN KESGYPIINAPTKTKLEPSVFHDIFPGVKEPAVLNKNDPRLKVDFEEAIFSKYVGNVN THVDEYMQEAIDHYAGQLMTLDIDTSEMCLEDAVYGTEGLEALDLTTSAGYPYVTMGI KKRDILSKKTRDLSKLKECMDKYGLNLPMVTYVKDELRSREKVEQGKSRLIEASSLND SVAMRQCFGNLYKTFHQNPGVVTGSAVGCNPDTFWSKIPVMLDGDLFAFDYTGYDASL SPVWFACLSRVLEKLGYDYKAGRYISYLCHSYHLYKNKHYFVRGGMPSGCSGTSIFNS MINNIIIRTLLLKTYKNIDLDKFKMIAYGDDVIASYPYPIDAGLLAKAGKEYGLTMTP ADKSKEFNNVTWENVTFLKRYFRADEQHPFLVHPVMPMKEIHESIRWTKDAKNTQEHV RSLCELAWHNGQEVYEEFLSKIRSVPVGRCLLLPAYSTLRRKWLDQF" ORIGIN 1 ggcgtagtac tctggtatca cggtaccttt gtacgcctat tttactcccc ttccccccgt 61 aacttagaag cattaactac aagttcaata gtaggactac caaccaggta gttcaccgaa 121 caagcacttc tgtttacccg gtcctagtac ctgtgaagct gttcccacgg cggaagggga 181 aaaagatcgt tacccggcta cctacttcga gaagcctagt aatgtcattg aaactcttga 241 gcgttgcgtt cagcacagta ccccctgtgt agctttggct gatgagtctg ggcattcccc 301 actggcgaca gtggcccagg ctgcgttggc ggccaaccgg tccgggcaac cgggtcggac 361 gcttatttgt ggacatggtg tgaagagcct attgagctag gtagtagtcc tccggcccct 421 gaatgcggct aatcctaact ccggagcaag tgcgcgcaat ccagcgtgta acttgtcgta 481 acgcgtaagt ctggagcgga accgactact ttgggtgtcc gtgtttcctg ttttacctta 541 tttggctgct tatggtgaca atctagtgtt gttaccatat agcaattgga ttggccatcc 601 ggtgaatttc ttttgtgacg tttcttttgc ggtatttata ccaaactaca cgtgtattat 661 cagtttcaac ttgtatcatg ggtgcacaag tatctagaca acaaactggg tctcacgaga 721 cgaacgccat agccaccggc ggtagcacta ttcactacac caacatcaac tattacaagg 781 atagttatgc ggcaagtgcc accaaacaag actttagtca agatccatca aagttcactc 841 aacctgtggt agatgcattg caagcaagtt ctgtaccact aaagagcccg tctgctgagg 901 cttgtgggta tagtgacaga gttctccagc tgacatacgg aaacactacc attaccacgc 961 aagaggcagc aaatgtagtg gttgggtacg gacagtggcc agaacacctc ggtccgcggg 1021 atgcaaactc agttgatgct ccaaccaagc cagatgtagc aaccaaccgg ttttatactt 1081 tacaggctaa gaagtgggag gcaacttcaa agggttggta ttggaaactc ccggactgct 1141 tgaacgacct tggtgtcttc gggcaaaact gttggtacca cttcctgtac aggggaggtt 1201 gggctataca cgtgcagtgc aatgccagca aattccatca ggggaccttg ctagtggtcg 1261 ccattcccga gtggacacag ggtagaggtt tggacacttc tggaactaga acttacatgg 1321 agtacaacca agtcatgcca ggtgagagtg gagctttgtt taacactcca gagtggttgg 1381 acaatggcac aataatatca caggccctac tgttcccaca tcaatggata aacttgcgca 1441 ccaacaacag tgcaactttg atcctaccat atatgaacaa tattccagca gattcaccaa 1501 taagacacaa caattggaca ctggcagtga tcccggtctg cgaactgcaa ttctcaaccg 1561 gtgcaaccac acttgtcccc ataacagtta gcattgctcc attgtgcgct gaatttgacg 1621 gattgagaca ggctgtgtca caagggctgc ccgttaggtt aactcctgcc tcgaaccagt 1681 tcatgactac ctcagacgac tgtgtcgaag gtatattgcc agatttccac tccacgcctg 1741 agattaaaat accaggtgaa gtgaaaaacc tattagagtg tgcgcaagtg gaaactatgc 1801 tgatggtcaa caatgtgaat ggggtcaatg gaatgaagag gttcaccatc cccgtatcgg 1861 cacaatcaga tgtagaccag cagatcatgg ctttgaaagt agatccaggt agtgacggac 1921 catggcaggc tacataccta gggcagctgt gcagatatta caataactgg tcagggtctt 1981 tggaaatgac tttcatgttt tgtggttcgt tcatggccac tggcaaggtg ctcatcgcgt 2041 attcaccacc aggtgggagc gcacccacta cacggaagga tgctatgttg ggcacacatg 2101 ttgtgtggga ctttggactg caatcatcca tcactctaag cataccatgg atctcaaaca 2161 cgtgcatgcg aaatgtggct agcttagctt atcaggatta ctttgctgcg gggtacgtca 2221 caatgtggta ccaaaccaac tttgtggtcc cagcaggagc tcccacaagt gcacagatca 2281 tagcacttgc cgcagccaga ccaaactttg tgctccgttt gttgaaagat agtgaccaga 2341 tatcacagag cgcagtgctg aatggacccg tagaagatgc catcaacacc acagtcacca 2401 aattgattgg caccgcagcc gataccgtag cctcgggtcc gcaccaagga gatgccgtgc 2461 cggctttaca agctgctgaa acgggagcca ccagtactgc tgatgacagt gggatgattg 2521 aaacacgcac tgtttacaat cacaactcaa tcgctgaaac tggtgttgaa tccttttatt 2581 ctagatcagg gctagtggga atggttagtc tcatcagatc tggagctgag agcacgaact 2641 cattcactac gtggaacatt gacacaatgg gctttgttca gcaaagaaga aagctagagc 2701 tattcaccta catgaggttt gatgctgagt tcacactagt tatcacccag gacaatgcag 2761 cagagtttcc ccagttagtc gtacaatata tgtacattcc gcctggcagc cctcttccaa 2821 aaactgtgga ctcttacttg tggcaatccg gtaccaaccc ctcgatattt gtgaaaacaa 2881 cagacccacc agcacaattt tccattccct tcatgtcaac gtgtgctgcc tacgcttggt 2941 tctacgacgg ctatccgtct tttggaagac ccagtgaaac cggtggtagg ggcagcattt 3001 cgtacggtgt gttgccacca aacatgttcg ggactttggc cttcagaatg gttggttcct 3061 cacaaaacac aaacttgcgt gtgcgcattt acatgaaacc aaaacacgtt aagtgctggg 3121 gaccacgccc catgaggatg ttgccatatg tagaaaagaa cagaccatct tacagcaaga 3181 cagcaaaacc aattgctgac cgtacaagca taaccactgt aggaaagttt gggcagcaga 3241 gtggtgcagt ttatgtgggc aactatagaa tagtcaacag gcatcttgca aatgaatttg 3301 atgcacagtc cacagtgtgg gagagttacg agagagatct tcttgtgtcg actaccactg 3361 cgcatgggtg tgacactatc gctaggtgca agtgtaatac aggcgtgtac ttctgtcgca 3421 gtaagggcaa acactaccca gtgtgctttc agggacctgg tttgacatgg attgaggcaa 3481 acgagtacta cccagctaga tatcaatctc atgtactgct tgcttcagga ccggcagagc 3541 ccggtgattg tggaggtatc cttagatgtc aacatggtgt gattgggata gtgacagcag 3601 gaggcaatgg tttggttgct tttgccgact tacgtgacct tttgtggttg gaggatgacg 3661 ctatggaaca ggggattgct gattacgtgg cccagcttgg acaagctttt ggcagtggat 3721 tcactaatga aattgcagag aagacacagc aaatcaaaga catgttgatt gggcaggact 3781 ctattttaga gaagtgtctg aaagcactca tcaagattgt cagtgcccta gttattattg 3841 tcaggaacca tgaggacctt gttacagtca ccgccactct tgccttgatt gggtgttctg 3901 gatctccatg gcagtggctc aagacaaaaa tatgtcaata tctccagatt cccacggtgg 3961 agaagcaggg tgactcgtgg ttgaagaaat tcactgaagc aacaaatgct gcgaagggcc 4021 ttgaatggat tgcccagaag atcagtaaat tcattgattg gctcaagaca aaaattgtac 4081 ctgaagtcaa agaaaaagta cagttcctgg acaaactcaa acaattgccc ctcattgagt 4141 cacaagtgac ctccattgaa cacagtgctc ccagtcaaga tgatcaggag aaattacatg 4201 ggaatataca atacctggcc cattattgca ggaggtacgc tcctctgtat gctacagaag 4261 ctagaagggt atttgcatta gaaaagaaaa tgaacaatta catgcagttc aagaccaaat 4321 cccgcattga acctgtatgt ttattgattc atggtacccc tggcgccggc aaatcaattg 4381 cgtccagtct cataggaaga gctattgcag aaaagttaca cagttgtgtg tactcactcc 4441 caccagaccc agaccacttt gatggttaca aacaacaagc agttgtcatt atggatgacc 4501 tttgccagaa cccagacggg aaagacgtga gcttactatg tcagatggta tccactgtgg 4561 acttcatccc accaatggct agtctcgaag agaaaggcat actttatacg tcacctttca 4621 tgattgcctc cacaaaccac ggttctatta ccgctccaac aatctcagac agcagagccc 4681 tgaatagaag attttatcta gatgtggaca tagtcataaa tgatgactat aaattgaaca 4741 acaaattaaa tatgcaacta gcatgtcagc actgtagcaa ctgtgaccca gcaaacttca 4801 aacactgctg ccccttagtg tgtggtaggg ccatacaatt cattgacaga aggaccaacg 4861 ttaggtacac acttgacatg cttgtgacag agatgttcag ggagtacaac caccgcaaca 4921 gtattggcaa tgtcttagag gccctattcc aaggaccacc tgtgtttaga gacctgaaga 4981 tttctgtaga ccctgagact ccagcaccac cagccattgc agacttgttg aaatcagtgg 5041 atagtgaaga ggtcagagag tactgtaaaa acaaaggatg gataattcca gtaacggagt 5101 gtcaaactga aagacacctc tccagagctt tgactattct ccaagccatc tcaacatttg 5161 tagctgtcgc gggttgcatt tacatcgtgt acaaactctt cgcagggttt caaggtgctt 5221 acacagggct cccattcaat aaaccaaaag tgcccaccat caggcaggca aaagttcaag 5281 ggccttcttt tgaatttgca gtggcaatga tgaagagaaa ttcagcaatc attaagacag 5341 ggcagggtga gttcaccatg cttggcatct gggacaaatg ggcagtggta ccacgccacg 5401 ctaaacctgg agacactgtg attgtcgatg acaaggagct cagagtcctt gatgctaagg 5461 aactggtgga ccctgaagga gtaaacctag agctgacaat gattaagcta gatagaaatg 5521 agaaattcag agacatccgt ggtttcatac ctaaagagag tggagagtta tctgaagcag 5581 ttctggcaat aaacactagc aaattcccaa acatgttcat acctgtgggt gcagttaaag 5641 aatatggttt cctcaacctc agtggcaccc caacccatag aatgcttatg tataacttcc 5701 ccactaaatc aggccaatgt ggcggagtgt taatggcaac tggtaaagtc ataggcattc 5761 atgttggcgg caacggacat cagggctttg ctgccacact actcagagat tacttcgctg 5821 aggaacaagg tgagattgag tggatggaga caaacaaaga atcaggctat cctattatca 5881 atgctccaac taaaacgaag ttagaaccca gtgtttttca tgacatcttc cctggcgtta 5941 aggaaccagc agttttgaac aagaatgacc ctagactcaa agttgacttt gaagaggcaa 6001 tcttttccaa gtatgtaggc aatgttaaca ctcatgtgga tgaatacatg caggaagcta 6061 ttgaccacta cgccggacaa ttgatgacac ttgacattga taccagtgaa atgtgcctgg 6121 aagatgccgt ctacggcaca gaaggtctag aggcattgga tttgacaact agtgcagggt 6181 atccgtatgt aacaatggga ataaagaaaa gggatatcct ctcaaagaag actcgagacc 6241 tgtccaaact aaaagaatgc atggacaagt atggtctcaa cctaccaatg gtgacttacg 6301 tgaaggatga attgaggagc cgtgagaaag tagagcaggg caagtcacgc ctgatcgaag 6361 cctccagcct caacgattct gtagcgatga gacaatgttt tggaaacctt tacaagactt 6421 ttcaccagaa ccctggtgtg gttactggaa gtgcagtggg ctgcaatccc gacacatttt 6481 ggagcaaaat tccagtgatg ctggacggag atttgtttgc ctttgattac acaggttatg 6541 atgctagctt gagccctgtc tggttcgcgt gtctaagccg tgtgttggaa aaattgggtt 6601 atgactacaa agcagggagg tacatctcat acttgtgcca ctcataccat ctatacaaaa 6661 acaaacacta ttttgtgcgt ggtggcatgc cctccggatg ctctggtaca tcaatcttca 6721 actccatgat caacaatatt ataattagaa ccttgttgtt gaaaacctac aaaaacattg 6781 atttggacaa gttcaagatg atcgcctatg gagatgatgt gatcgccagc tacccatacc 6841 caattgatgc aggcctgctt gctaaggcgg ggaaggagta tggcctgaca atgactcctg 6901 cagataaatc caaggagttc aacaatgtga catgggaaaa tgtcactttc ctcaaacggt 6961 actttcgtgc cgatgaacag caccccttct tggttcaccc agtgatgcca atgaaggaga 7021 tacatgagtc catcagatgg acaaaagatg caaagaatac acaggaacat gtgaggtcat 7081 tgtgcgaatt ggcttggcac aatggtcaag aagtttatga agaattcttg agcaagatta 7141 ggagtgttcc tgttggacga tgcttactac tgcctgcata ctcaacactc aggcgcaagt 7201 ggctcgacca attctaaatt agttttcagt ttgaccttaa ttcggcctaa ttggaagacc 7261 ctgtcacgta tctggacgtg acaaaagcgt gacaggggtg aatttagcac aaccag //