LOCUS NOLA3 7176 bp RNA linear 20-MAY-2021 DEFINITION (USA/2016). ACCESSION VERSION KEYWORDS . SOURCE Enterovirus J ORGANISM Enterovirus J Unclassified. REFERENCE 1 (bases 1 to 7176) AUTHORS Zhao,G., Droit,L., Gilbert,M.H., Schiro,F.R., Didier,P.J., Si,X., Paredes,A., Handley,S.A., Virgin,H.W., Bohm,R.P. and Wang,D. TITLE Virome biogeography in the lower gastrointestinal tract of rhesus macaques with chronic diarrhea JOURNAL Virology 527, 77-88 (2019) PUBMED 30468938 REFERENCE 2 (bases 1 to 7176) AUTHORS Wang,D., Handley,S.A., Tahan,S., Zhao,G., Droit,L., Gilbert,M.H., Schiro,F.R., Didier,P.J., Si,X., Paredes,A., Virgin,H.W., Bohm,R.P. and Mihindukulasuriya,K.A. TITLE Direct Submission JOURNAL Submitted (20-MAY-2021) Department of Pathology & Immunology, Washington University in St. Louis, 4523 Clayton Avenue, St. Louis, MO 63110, USA COMMENT ##Assembly-Data-START## Created with VAPiDv1.6.6 Reference annotations were pulled from FJ007373.1 ##Assembly-Data-END##. FEATURES Location/Qualifiers source 1..7176 /organism="Enterovirus J" /mol_type="genomic RNA" /strain="NOLA3" /host="Homo sapiens" /country="USA" /collection_date="2016" CDS 598..6876 /codon_start=1 /product="polyprotein" /translation="MGAQVSTQQSGTHENTNVATGGSTIHYTTVNYYKDSYAASANKQ DFSQDPSKFTQPVVDALQASSVPLKSPSAEACGYSDRVLQLTYGNSTITTQEAANVVV GYGQWPTHLGPQDANSVDAPTKPDVATNRFYTLQAKKWESTSKGWYWKLPDCLNDMGV FGQNCYYHFLYRGGWAIHVQCNASKFHQGTLLVVAIPEWTQGRALNEAGTQTYMEYRQ TMPGEVGGVLNDPEWLDNGTIVSQALLYPHQWINLRTNNCATLVLPYMNNIPADSPIK HNNWTLLVIPVCKLESSTGATTVIPVTVSIAPLCAEFDGLRQAVSQGLPVKLVPGSNQ FMTTSDDCVEGILPDFHATPEIKIPGEVKNLLECAQVETMLMANNVSTATGLERFTIP ISVQSDVDQQIMALKVDPGSDGPWQSTYLGQLCRYYNNWSGSLEITFMFCGSFMATGK VLIAYSPPGGDPPRTRKDAMLGTHVVWDFGLQSSVTLCIPWISNTCMRNVASLAYQDY FAAGYVTMWYQTNFVVPAGAPTSARIVALAAAKSNFVLRLLKDSDQISQDAVLNGPVE EAMNNTVTKLIGTAADTIASGPHQGTAVPALQAAETGATSTAEDGGMIETRTVYNHNS IAETGIESFYSRAGLVGMVSLIRSGGSATTFTNWVIDTMGFVQLRRKLELFTYMRFDA EFTLVITQDDASEFPNLMVQYMYIPPGSPVPRTADSYIWQSGTNPSIFVKTTDPPAQF SIPFMSTCAAYAWFYDGYPSFGKPTEASGRGSESYGVLPPNMFGTLAFRMVGSSVDTN LRVRIYMRPKHVKCWGPRPFRMLPYVEKNRPAYNRTIKPIQDRATITTVGRFGQQSGA VYVGNYRIVNRHLANEFDAQCTVWESYERDLLVSTTTAHGCDTIARCKCNSGVYFCRS KGKHYPVCFQGPGLTWIEANEYYPARYQSHVLLASGPAEPGDCGGILRCQHGVIGIVT AGGNGLVAFADLRDLLWLEDDAMEQGIADYVAQLGQAFGSGFTNEIAEKTQQIKDMLI GQDSILEKCLKALIKIVSALVIIVRNHEDLVTVTATLALIGCSGSPWQWLKTKICQYL QIPMVEKQGDSWLKKFTEATNAAKGLEWIAQKISKFIDWLKTKIVPEVKEKVQFLDKL KQLPLIESQVTSIEHSAPSQDDQEKLHGNVQYLAHYCRRYAPLYAAEARRVFALEKKM NNYMQFKTKSRIEPVCLLIHGTPGAGKSIASSLIGRAIAEKLHSCVYSLPPDPDHFDG YKQQAVVIMDDLCQNPDGKDVSLLCQMVSTVDFIPPMASLEEKGILYTSPFMIASTNH GSITAPTISDSRALNRRFYLDVDIAINDDYKLNNKLNMQLACQHCSNCDPANFKHCCP LVCGRAIQFIDRRTNVRYTLDMLVTEMFREYNHRNSIGNVLEALFQGPPVYRDLKISV GPETPAPPAIADLLKSVDSEEVREYCKTKGWIIPVTECQTERHLSRALTVLQAISTFV AVAGCIYIVYKLFAGFQGAYTGLPFNKLRVPTIRQAKVQGPSFEFAVAMMKRNSAIIK TGQGEFTMLGIWDKWAVVPRHAKPGDTVIVDDKELRVLDAKELVDPEGVNLELTMIKL DRNEKFRDIRGFIPKESGELSEAVLAINTSKFPNMFIPVGAVKEYGFLNLSGTPTHRM LMYNFPTKSGQCGGVLMATGKVIGIHVGGNGHQGFAATLLRDYFVEEQGEIEWMETNK ESGYPIINAPTKTKLEPSVFHDIFPGVKEPAVLNKNDPRLKVDFEEAIFSKYVGNVNT HVDEYMQEAIDHYAGQLMTLDIDTSEMCLEDAVYGTEGLEALDLTTSAGYPYVTMGIK KRDILSKKTRDLSKLKECMDKYGLNLPMVTYVKDELRSREKVEQGKSRLIEASSLNDS VAMRQCFGNLYKTFHQNPGVVTGSAVGCNPDTFWSKIPVMLDGDLFAFDYTGYDASLS PVWFACLSRVLEKLGYDYKAGRYISYLCHSYHLYKNKHYFVRGGMPSGCSGTSIFNSM INNIIIRTLLLKTYKNIDLDKFKMIAYGDDVIASYPYPIDAGLLAKSGGKGVRPDNDS RGQIQGVQQRDMGKCHFP" ORIGIN 1 ccaaccaggt ggttcaccga acaagcactt ctgtttaccc ggtcttagta cctgttaagc 61 cgttcccacg gcagaagggg aaaaagatcg ttacccggct atctacttcg agaagcctag 121 taatgccatc gaaactctta agcgttgcgt tcagcacagt accccctgtg tagctttggc 181 tgatgagtct gggcattccc cactggcgac agtggcccag gctgcgttgg cggccaaccg 241 atccgggcaa ccgggtcgga cgctcatttg tggacatggt gtgaagagcc tattgagcta 301 ggtagtagtc ctccggcccc tgaatgcggc taatcctaac tccggagcaa gtgcatgcaa 361 tccagtgtgt agcttgtcgt aatgcgtaag tctggagcgg aaccgactac tttgggtgtc 421 cgtgtttcct gttttacctc atctggctgc ttatggtgac aatctagtgt tgttaccata 481 tagcgattgg attggccatc cggtgaatat ccttgtgaca gttctctcac ggcatttaca 541 cttcatttgc acgtgtgcta ctaatcctaa tttgtttgtt aacatcaaag atcagagatg 601 ggtgcacaag tttctacgca acaatctgga actcatgaaa acaccaatgt tgcaacagga 661 ggatcaacaa ttcattacac cactgttaac tactacaaag actcctatgc agcatcagca 721 aacaaacaag atttttccca agatccatcg aagtttactc agcccgtggt tgacgcgcta 781 caagcgtcat cggtcccact gaaaagccca tctgctgagg catgtggtta cagtgatagg 841 gtgttgcaat tgacatacgg caattcaacg ataacaactc aggaggcagc aaacgtggta 901 gttggttatg gccagtggcc cacacacctg gggccccagg acgccaactc agtggatgca 961 ccaacaaaac cagacgttgc caccaaccgt ttttacaccc tacaagctaa gaaatgggaa 1021 tctacctcaa agggatggta ctggaaattg cctgactgtt tgaatgacat gggcgttttt 1081 gggcaaaact gttactatca ctttctgtac aggggcggtt gggcaataca cgtacagtgc 1141 aacgctagca aatttcacca aggcaccttg ttggttgttg caatccccga gtggacacaa 1201 ggcagggccc ttaatgaggc tggaacccaa acgtacatgg aatacagaca aaccatgccc 1261 ggagaggttg gtggagtact caatgatcct gagtggttgg ataatggcac aatcgtttcc 1321 caagccctct tgtacccaca ccagtggata aacctgagga caaataactg tgcgacactg 1381 gttcttccat acatgaacaa cattccagct gattcgccaa taaaacacaa taattggaca 1441 ctattagtga ttccagtttg taaattggaa agctcaacgg gggcaacgac agtgatccca 1501 gttacagtta gcatagcgcc gttgtgtgcg gagttcgatg ggctcagaca ggcggtgtca 1561 caaggattac ctgtgaaatt ggtgccggga tccaaccaat ttatgaccac ctcagacgat 1621 tgtgttgagg gcattttacc agacttccac gctacaccag agatcaagat cccgggtgaa 1681 gtcaagaacc tattggagtg tgcccaagtt gagaccatgt tgatggccaa caacgtaagt 1741 actgcaacag ggttagaacg cttcacaata ccaatatctg ttcagtcaga tgtagatcaa 1801 caaataatgg cactcaaagt tgatccagga agtgatgggc catggcaatc tacatacctc 1861 ggacagctct gtagatatta caacaactgg tccggatcac tggaaatcac tttcatgttc 1921 tgtgggtctt tcatggccac tggcaaggtg ctgatagcat actcaccacc agggggtgac 1981 ccacctagaa cacgcaaaga cgcaatgcta ggtacacatg ttgtctggga ctttgggctg 2041 caatcatccg tcaccctatg cataccttgg atctcgaaca cgtgtatgcg caatgtggcc 2101 agtctagcgt accaggacta ttttgcagca ggctatgtta caatgtggta ccaaacaaat 2161 tttgtcgtcc cagcgggggc acccaccagt gctcggatag tagctctggc tgctgcaaag 2221 tcaaactttg tgctacggtt gttgaaagac agtgaccaga tatcacaaga tgcagtgttg 2281 aacggcccag tggaagaagc tatgaacaac actgtaacca agctgattgg cacagcagct 2341 gataccatag cctctggtcc acaccaggga actgcagtac cagcactaca ggcagctgag 2401 actggtgcta cgagcaccgc agaagatggt ggaatgatag aaacccgcac agtctataat 2461 cacaattcta tagcagaaac tgggattgaa tcattctact ccagagccgg cctagttggt 2521 atggtgagcc ttataagatc aggtggaagc gcaactacct tcaccaactg ggtcattgac 2581 acaatgggtt ttgtgcaact gagaagaaag ctggagttgt tcacatatat gaggtttgat 2641 gctgagttta ctctggtaat cacccaggac gatgccagcg agtttcccaa cttgatggtg 2701 caatatatgt acataccacc aggcagcccc gtacccagaa cagcggattc gtacatctgg 2761 caatctggta cgaatccctc aatatttgtg aagacaactg atccaccagc acaattttcc 2821 attccattca tgtctacatg cgctgcatat gcttggtttt atgatggtta cccatccttc 2881 gggaaaccca ctgaagcgtc tggcaggggt agcgagtctt atggagtttt gccaccaaac 2941 atgtttggca ccttagcctt taggatggtg ggctcttcag tggacaccaa tctgagggtt 3001 cgcatttaca tgcgacccaa acatgttaag tgctggggcc ctcgaccctt taggatgcta 3061 ccgtatgttg aaaagaacag accggcatac aacaggacta taaaacctat acaggacaga 3121 gccacaatta ccacagtagg caggtttgga cagcagagcg gggcagttta tgtaggcaat 3181 tatagaatag tcaacagaca ccttgcaaat gaatttgacg cacaatgcac cgtgtgggaa 3241 agctacgaga gagacctgct tgtatccacc accaccgcac atggctgtga caccatcgcc 3301 agatgtaagt gcaactcagg agtgtacttt tgccgtagta agggcaagca ttatccagta 3361 tgcttccaag gacctggtct gacatggatt gaagcaaacg agtactatcc agctagatac 3421 caatcccatg tgctgcttgc ctcaggaccg gcagagcccg gtgactgtgg aggtattctt 3481 agatgccaac atggtgtgat tggaatagta acagcaggag gtaatggatt ggttgctttt 3541 gctgacttgc gcgaccttct gtggttggaa gatgacgcaa tggaacaggg aattgctgat 3601 tacgtggctc agcttggaca ggcttttggc agtggattca ccaacgaaat tgcagaaaag 3661 acacagcaaa tcaaagacat gttaattgga caggattcaa tcttggaaaa gtgcctgaaa 3721 gcgctcatta aaattgtcag tgccctagtt atcatagtta ggaaccacga agatcttgtt 3781 acagtcactg ccactctcgc cttgattgga tgctctggat ctccatggca gtggctcaag 3841 accaagatat gccagtatct tcaaattccc atggtagaaa aacagggtga ttcctggctg 3901 aagaaattta ctgaggcgac gaatgctgca aaggggcttg agtggattgc ccaaaagatc 3961 agtaaattca tcgactggct aaagaccaaa atcgtacctg aagtcaaaga aaaagtgcaa 4021 ttcttggaca aactcaaaca attgcctctt attgaatcac aagtgacctc tattgaacac 4081 agtgcgccca gtcaagatga tcaggagaaa ttacatggaa atgtacaata cctggcccat 4141 tactgcagga gatatgctcc tctgtatgcc gcagaagcta gaagggtgtt tgcattagag 4201 aagaagatga ataattacat gcagttcaag accaaatccc gcattgaacc tgtatgtctg 4261 ctgattcatg gaacccctgg cgccggcaaa tcgattgcat cgagtcttat aggaagagct 4321 attgcagaaa aattgcacag ttgtgtgtac tcactcccac cagacccaga ccacttcgat 4381 ggttacaaac aacaagcagt agtcattatg gatgatctct gccagaaccc agatggaaag 4441 gatgtgagct tactgtgtca gatggtgtcc actgtggatt tcatcccacc aatggctagt 4501 cttgaggaga agggcattct ttacacatca cccttcatga ttgcttccac caaccatggt 4561 tccatcaccg ctccgacaat ctcagacagt agagctttaa ataggagatt ctatctagat 4621 gtggacatag ccataaatga tgactacaaa ttgaataaca aactgaacat gcaattagcg 4681 tgtcaacact gcagtaactg tgatccagca aattttaaac attgctgccc cttggtatgt 4741 ggcagggcta ttcaattcat tgacagaaga accaacgtca ggtacacact tgatatgctt 4801 gtgacagaga tgttcagaga gtacaaccat cgcaatagta ttggaaatgt tttggaagct 4861 ctattccaag gaccccctgt atacagggac ctgaaaattt ctgtaggccc tgaaacccca 4921 gcaccgccag ccattgcaga cttgttgaaa tcagtggata gtgaggaggt tagggaatat 4981 tgcaaaacca aagggtggat aattccagtg acggagtgtc aaactgaaag acacctctct 5041 agagctttga ctgttctcca agccatctca acatttgtag ctgttgcagg ctgcatttac 5101 atagtgtaca aactcttcgc agggtttcaa ggtgcttata cagggcttcc attcaacaaa 5161 ctaagagtgc ctaccatcag acaagcaaaa gtccaaggac cttcctttga attcgctgta 5221 gcgatgatga agagaaactc cgcaatcatc aagacaggac agggggagtt taccatgctc 5281 ggtatctggg acaaatgggc agtggtacca cgccacgcta aacctggaga cactgtgatt 5341 gtcgatgaca aggagctcag agtcctcgat gccaaggaac tggtggaccc tgagggagtg 5401 aacctagaac tgacaatgat caaacttgac agaaatgaga agttcagaga catccgtggt 5461 ttcattccca aggagagtgg agagctatct gaagcagttt tggcaataaa cactagcaaa 5521 ttcccaaata tgttcatacc agtgggtgct gtcaaggagt acggtttctt gaatcttagt 5581 ggcaccccaa ctcacagaat gctcatgtac aatttcccca ccaaatcagg tcagtgtgga 5641 ggagtgttga tggcaactgg aaaagttatt ggtattcatg ttggtggcaa cgggcaccag 5701 ggattcgctg ccacactact cagagattat tttgttgaag agcaaggtga gatcgagtgg 5761 atggaaacga acaaggagtc aggctatcca attatcaacg caccaaccaa aacaaagcta 5821 gaacccagtg tgtttcatga catcttccct ggagttaagg agccagcagt cttgaataag 5881 aatgacccca gactcaaagt cgactttgaa gaggcaatct tttccaaata tgtaggcaat 5941 gttaacactc acgtagatga atacatgcag gaagccattg accactatgc cgggcaattg 6001 atgacacttg acattgacac cagcgaaatg tgtctggaag atgcagtcta tggcacagaa 6061 ggtttagaag cattggattt aacaactagt gcagggtatc catatgtgac aatggggata 6121 aagaagagag atatcctttc aaagaagaca cgagacctgt ccaaactaaa agagtgcatg 6181 gacaaatacg gtctcaacct accaatggtg acatacgtga aggatgagtt gaggagccgc 6241 gagaaggtgg aacagggcaa atcacgccta attgaagcct ccagcctcaa tgattctgta 6301 gcgatgagac aatgttttgg aaatctttac aagacttttc accagaaccc tggcgtggtt 6361 actggaagtg cagtgggctg caatcccgac acattttgga gcaagattcc agtaatgctg 6421 gacggagatt tgtttgcctt tgattacaca ggttatgatg ctagcttgag ccctgtttgg 6481 ttcgcgtgtc taagccgtgt attagaaaaa ttgggttatg attacaaagc agggaggtac 6541 atctcatatc tgtgccactc ataccatcta tacaaaaaca agcactactt tgtgcgtggt 6601 ggcatgcctt ctgggtgttc tggcacatca atcttcaact ctatgatcaa caatatcata 6661 attagaacct tgttgctgaa gacttacaaa aacattgatt tggacaagtt caagatgatc 6721 gcttatggag atgatgtgat tgccagttac ccatacccaa tagatgcagg cctgcttgct 6781 aagtcggggg ggaaaggagt acggcctgac aatgactccc gcggacaaat ccaaggagtt 6841 caacaacgtg acatgggaaa atgtcacttt ccttaaacgg tactttcgtg ccgatgaaca 6901 atactccttc ttgattcacc cagtgatgcc aatgaaggag atacatgagt ccatcagatg 6961 gacaaaagat gcaaagaata cacaggagca cgtgaggtca ttgtgcgaat tggcctggca 7021 caacggtcaa gaagtttatg aagaattcct gagtaagatt aggagtgttc ctgtcggacg 7081 atgcctactg ttgcctgcat actcaacact caggcgcaag tggctcgacc aattttaaat 7141 tagatttcaa tttgacctta attcggccca attggt //