LOCUS NOLA4 6907 bp RNA linear 20-MAY-2021 DEFINITION (USA/2016). ACCESSION VERSION KEYWORDS . SOURCE Simian enterovirus SV19 ORGANISM Simian enterovirus SV19 Unclassified. REFERENCE 1 (bases 1 to 6907) AUTHORS Zhao,G., Droit,L., Gilbert,M.H., Schiro,F.R., Didier,P.J., Si,X., Paredes,A., Handley,S.A., Virgin,H.W., Bohm,R.P. and Wang,D. TITLE Virome biogeography in the lower gastrointestinal tract of rhesus macaques with chronic diarrhea JOURNAL Virology 527, 77-88 (2019) PUBMED 30468938 REFERENCE 2 (bases 1 to 6907) AUTHORS Wang,D., Handley,S.A., Tahan,S., Zhao,G., Droit,L., Gilbert,M.H., Schiro,F.R., Didier,P.J., Si,X., Paredes,A., Virgin,H.W., Bohm,R.P. and Mihindukulasuriya,K.A. TITLE Direct Submission JOURNAL Submitted (20-MAY-2021) Department of Pathology & Immunology, Washington University in St. Louis, 4523 Clayton Avenue, St. Louis, MO 63110, USA COMMENT ##Assembly-Data-START## Created with VAPiDv1.6.6 Reference annotations were pulled from AF326754.2 ##Assembly-Data-END##. FEATURES Location/Qualifiers source 1..6907 /organism="Simian enterovirus SV19" /mol_type="genomic RNA" /strain="NOLA4" /host="Homo sapiens" /country="USA" /collection_date="2016" CDS 312..6866 /codon_start=1 /product="polyprotein" /translation="MGAQVSTQKTGSHENANLATGGSTINYTTINYYKESYAASATKQ DFSQDPSKFTQPVVDVIKESSVPLKSPSAEACGYSDRVAQLTLGNSTITTQEAANITV GYAEWPEFCSDTDATAVDKPTRPDVSVNRFYTLSAKSWEKTSKGWYWKFPDVLTETGV FGQNAQFHYLYRSGFCIHVQCNASKFHQGTLLVATIPEFTVARSDASTDPTTAAHPTY NAAQPGKGGKEITHPYVLDSGVPLSQALIYPHQWINLRTNNCATIVVPYMNAVPYDSA LNHCNFGLVVIPVAPLNYTTGATTAIPVTVTIAPMCAEFAGLRNAVTQGIPVELRPGS NQFLTTDDDLSAPILPGFHPTPEIHIPGEVKNMLEIAQVESILEVNNLQSNENDPMSR LLIPVSVQSAVDQLCASFRVDPGRAGPWESTLVGQLCRYYTQWSGSLEVTFMFTGSFM ATGKMLIAYTPPGGAQPPSREVAMLGTHVIWDFGLQSSVTLIIPWISNAHYRTQATNN YFEYYSSGIVTLWYQTNYVVPDGAPTSAYIIALGAAQPNFSLKLCKDTESIAQEAILQ GDPESALETFVGSQINKTLTAADTKPSTHKISTGDTPALQAAETGATSNASDENMIET RCVVNKHSVAETSVEHFYGRAALVGMVSILTSEQTSNGFTNWDIDIMGFVQQRRKLEI FTYMRFDAEFTFIATADDGSADTTMLQYMYIPPGAPKPTQRDSFEWQSATNPSIFVRM TDPPAQVSVPFMSPASAYQWFYDGYPTFGEHTASTYSWYGVCPNNLMGTFAVRAVGSG SITANIRIRVYMRMKHVRAWIPRPFRSQPYLLKNYPNYNGKSLKCTSTSRNSITTTGA FGQQSGAVYVCNYRVINRHLATEEDWKNLVWEDYQRDLLVSNTKAHGCDTIARCKCQT GVYFCKSQNKHYPVSFQGPGLVHVQANEYYPERYQSHVLLANGISKAGDCGGILRCQH GVIGLVTMGGDGLVGFADIRDLLWLEDDVMEQGVTDYIKGLGDAFGTGFTESISREVQ ALKDQLLGSEGVVEKILKNLVKIVSALVIVIRSDYDLVTMTATLALIGCHTSPWAWLK AKVCSFLGLPIAQKQGDNWLKKFNDMANAAKGLEWVAIKISKFIDWLKQKVVPAAREK VEFLNNLKQLPLLENQVSNLEQAAASQDDLEALFGNVQYLAIHCRKYQPLYASEARRI ATLERRVNNYMQFKNKQRIEPVCLIIRGAPGTGKSLATGIIARAIAEKYHSSVYSLPP DPDHFDGYRQQVVTVMDDLCQNPDGKDISLFCQMVSTVEFIPPMASLEEKGLPFTSKF VIASTNSSNIIVPTVSDSEAIRRRFYMDCDIEVPESYRLENGKLDASRAARLCSENNT ANFKKCSPLVCGKAIQLKDRKSKVRYSLDSVVSELIREYNNRNSVGNTIEALFQGPPV FKPIKISLTEPAPPAIADLLSSVDSEEVRQYCKDKGWIIPDTPTNIERHVNRAVAVLQ SITTVVAVVSLVYVIYKLFAGFQGAYSGMPKAALKKPVLRTATVQGPCLDFALSLLRR NIRQVQTDKGHFTMLGVRDRIAVLPRHAEPSGTIWIEGKQVKVLDAVELVDEQQVNLE LTLVTLDMNEKFRDITKFIPEDIEPVAEATLVINTEQMPSMFVPVGKVENYGFLNLSG RPTHRTLMYNFPTKAGQCGGVVTSVGKIVGIHVGGNGRQGFCAALKRCYFTSEQGEIQ WMKPNSETGRYNINGPTNTKLEPSIFHDVFEGKKEPAALSSKDKRLEVDFEEALFSKY IGNKIHEPDEYMIQAAHHYANQLKQLNIDTSRMSMADACYGTDNLEAIDLSTSAGYPY NALGIRKRQILNPETRDVSKMKFYMDKYGLDLPYSTYVKDELRSIEKIKKGKSRLIEA SSLNDSVYTRMCFGHLFETFHANPGTITGSAVGCNPDTFWSKIPILLPGSLFAFDYTA YDASLSPAWFRALEIVLRELGYDSEAINVIEGINHSHHIYRNKTYCVLGGMPSGCSGT SIFNSMINNIIIRTLLIKTFKGIDLDELCMISYGDDVLASYPFPIDCQELANTGKEYG LVMTPADKGSCFNEVTWENATFLKRGFKPDEQFPFLIHPTMPMSEIHESIRWTRDARN TQDHVRSLCLLAWHNGKEIYDQFVKKIRSVPIGLALSIPEYNNLRRLWLEQF" ORIGIN 1 tctcactcac aggacgcttg attcatgaca tggtgcgaag agcctattga gctaggtagt 61 agtcctccgg cccctgaatg cggctaatcc taaccacgga gccatgcgct gcaaaccagt 121 agcgttatgg tcgtaacgag taattctgtg gcggaaccga ctactttggg tgtccgtgtt 181 tcctgtttta tttaccttgg ctgcttatgg tgacaattgt atagttgtca tcatatagct 241 attggattgg ccatccggat atttaatcac ttgttatttg ttcaaacaac ttttgcttga 301 atataaatac aatgggtgcc caagtttcta ctcagaaaac tggttctcat gagaatgcca 361 atttggcaac cggtggttcc accatcaact acaccaccat aaattattac aaagaatcct 421 atgctgcctc ggcaactaaa caagacttca gtcaagatcc atccaaattc actcaacctg 481 tagtagatgt gataaaggaa tcatctgtac cactcaagtc accttcagct gaagcttgtg 541 gttatagtga cagagttgcc cagttgacac tcggtaactc taccataaca acccaagagg 601 ctgctaatat aacagtagga tacgctgaat ggcctgagtt ttgctctgat accgacgcaa 661 cagctgtgga caaaccaaca cgccctgatg tttcagtcaa caggttctac acactcagtg 721 ccaaatcatg ggagaaaacc tcaaaaggtt ggtattggaa gttcccagac gtcttaacag 781 agacaggagt tttcggccaa aatgcccaat tccattatct atacagatca gggttctgta 841 ttcatgtgca atgcaatgca agcaaattcc atcaggggac cttacttgta gctactatcc 901 cagagttcac tgttgctaga tcggatgcct cgactgatcc caccaccgca gcacacccga 961 cttacaatgc tgcacaacca gggaaaggag ggaaagagat cacacaccca tacgttcttg 1021 attcaggtgt cccactgtca caggccctta tttacccaca tcaatggata aacttgagga 1081 ccaacaactg tgccacaata gttgttccct acatgaacgc tgttccctat gacagtgctc 1141 taaatcattg taattttggc ctggttgtca tcccagtagc acctcttaac tacaccacag 1201 gtgcaactac agctatacca gtaactgtta ccattgcccc aatgtgcgca gaatttgcag 1261 ggctacgtaa tgctgttacc caggggattc cagtagagct aagaccaggg tctaaccaat 1321 ttttgaccac tgatgatgat ctgtctgcgc ctatcctacc tggattccac cccacacccg 1381 aaatacatat tccaggtgag gtcaagaaca tgctagagat agctcaggtt gagtctatct 1441 tggaggtcaa caacttgcag agcaatgaga atgaccccat gagccgtctc ctcatacctg 1501 tgagcgtcca gtctgctgtt gaccagctct gtgctagctt ccgtgttgac cccggacgag 1561 ccggaccatg ggagtccact ctcgttggtc agctctgtcg ttattacacc cagtggtccg 1621 ggtccctgga agttaccttc atgttcactg gatcctttat ggcaacaggc aagatgttga 1681 tagcttacac tccgccaggg ggtgctcagc caccatcaag agaagttgca atgcttggta 1741 cccatgtcat atgggatttt gggttgcaat catctgtcac cctgatcata ccatggatta 1801 gcaacgcaca ttatcgcacg caagctacca acaactactt cgagtactac tcttcaggga 1861 ttgtgacact ctggtaccag accaactacg ttgtacccga tggtgccccc accagcgctt 1921 acatcattgc acttggagca gcacaaccaa atttttcatt gaagctctgt aaagacactg 1981 aatccattgc acaggaagct attcttcaag gtgatccgga gtcagcatta gagacatttg 2041 tagggagtca gataaacaaa actctcacag cggcagacac caaacccagt actcacaaga 2101 tttcaacagg tgacacacca gctctacaag cagcagaaac tggtgccaca tctaatgcta 2161 gtgatgagaa catgattgaa acgaggtgtg tggtcaacaa gcactccgtt gcagaaacct 2221 cagttgaaca tttctacggg cgcgcagcac ttgtaggcat ggtgagcata ctcacctcag 2281 aacaaacatc caatggtttt actaattggg acatagatat catgggtttt gtacaacaaa 2341 ggaggaagtt agagatcttc acctatatgc gctttgatgc tgagttcacc ttcattgcta 2401 ctgccgacga cgggagtgca gatactacaa tgttgcaata catgtacatt ccaccaggcg 2461 ctcccaagcc aacacagaga gactcatttg agtggcagtc ggcaactaac ccatccatct 2521 tcgtcaggat gacagaccca ccagcacaag tttctgttcc cttcatgtct cctgcctccg 2581 cttatcagtg gttctatgat ggatacccaa cctttgggga acacactgct tctacgtaca 2641 gctggtatgg ggtatgccca aacaatctta tggggacctt tgccgtgaga gctgttggat 2701 caggatctat cacagctaac attaggatta gagtctacat gagaatgaaa catgttagag 2761 cctggatacc aagaccattc agaagtcagc cctatctact taaaaactac cccaactata 2821 atggtaagag cttaaagtgc actagcacaa gtaggaattc cataacaact acaggtgcct 2881 ttggtcaaca gtctggcgcc gtttatgttt gtaactacag agtcattaac agacatttag 2941 ccactgagga agattggaag aaccttgtgt gggaagatta ccagagggac ctccttgtct 3001 ccaataccaa agcccatgga tgtgatacta ttgctagatg caaatgtcaa acaggagttt 3061 acttttgcaa atcacagaac aagcactacc cagtcagttt ccaaggacct ggtttagtcc 3121 atgtacaagc aaatgaatac taccctgaga gataccagtc acatgtactg ttagctaatg 3181 ggatctcaaa agccggtgac tgtggaggaa tactcaggtg ccaacatggt gtgattggac 3241 tggtgaccat gggtggtgat ggtctagttg gctttgctga catcagagac ctactgtggt 3301 tggaggatga cgtaatggaa cagggtgtca ccgattacat taagggtctt ggggacgcct 3361 ttggaactgg tttcacggaa tccatctcta gggaagtcca agcactgaag gaccaattat 3421 taggatcaga aggagtagtg gagaagattc tcaagaacct ggtcaagatt gtgtcggctc 3481 tggtcatagt aatcaggagt gactatgatc tagtcacgat gactgcaaca cttgctttga 3541 ttggctgcca cacaagtcca tgggcctggt tgaaggcaaa agtctgcagc ttccttggtc 3601 taccaatagc ccaaaaacaa ggggataact ggttgaaaaa gttcaacgac atggcaaatg 3661 cagctaaagg cttggaatgg gtagctatca agatctccaa atttattgat tggctcaagc 3721 aaaaggttgt acctgctgct agggaaaagg ttgaattcct taacaatctt aagcaactcc 3781 ctctacttga gaatcaggtc agcaatctag agcaggcagc cgccagccag gatgacttgg 3841 aggcactatt tggcaatgtg caatatttgg ccatccactg tagaaagtat cagccattgt 3901 atgcttctga agctcgcaga atcgcaacat tggagcgcag agtcaacaat tacatgcagt 3961 tcaagaacaa acaacggatt gaacctgtat gtttgatcat tcgtggtgct ccaggcacgg 4021 gcaaatcact tgcaacaggc attattgcta gagctattgc agagaaatac cactctagtg 4081 tgtactcctt accaccagat cctgatcact ttgatggtta tcgccaacaa gttgtcaccg 4141 tcatggacga tctttgtcag aacccagatg gaaaggatat ctccctgttt tgtcagatgg 4201 tttccaccgt tgagttcatt ccacctatgg catcactgga ggagaaagga ctgcccttta 4261 catcaaaatt tgtcatcgcc tcaacaaact ccagtaatat tattgtgcca actgtgtcag 4321 acagtgaagc aatcaggcgt cggttttata tggactgtga catcgaagtc cctgagtcct 4381 acaggcttga aaatggaaag ttggatgcat caagggcagc aaggttgtgc tcagaaaaca 4441 acacagctaa ctttaagaag tgcagtcccc tggtctgtgg gaaagctatt caactgaaag 4501 atagaaaatc caaggtaaga tacagtctgg actcagtagt ttcagagctc atcagagagt 4561 acaacaatag gaatagtgtt ggaaacacca ttgaagctct cttccaggga cctcccgtgt 4621 tcaagcccat caaaatatct ttgacagaac cagcccctcc agctattgct gatctgttgt 4681 cttcagttga cagtgaagag gtccggcagt actgtaagga caaagggtgg atcataccag 4741 acacacccac aaacattgag aggcatgtta acagggctgt ggcagttttg caatcaataa 4801 ctaccgtggt cgctgttgtg tccctagtat atgttatcta caaactcttt gctggctttc 4861 agggagctta ctcaggcatg cccaaagccg cgttgaagaa accggttttg agaaccgcta 4921 cagtgcaggg accttgtctc gactttgctc tgtcattgct tcgtaggaac atcagacaag 4981 tgcagactga caagggccat tttaccatgc ttggtgtgcg cgatcgcatt gccgtgctgc 5041 cacgccatgc tgaaccaagt ggaactatct ggattgaagg taaacaagtt aaggtccttg 5101 atgctgttga gctagttgat gaacaacaag tcaacctcga gctcacactc gtcaccctcg 5161 atatgaatga gaaattcaga gacatcacca aattcattcc agaggacatt gaacctgttg 5221 cagaagccac tcttgtaatc aacacagagc agatgccttc catgtttgtt cctgtaggaa 5281 aagttgaaaa ctatggattt ctgaacctga gtggaagacc aactcaccgt acgctcatgt 5341 acaacttccc gaccaaagct ggacagtgtg gaggagtagt tactagtgtt ggaaagattg 5401 ttggaatcca tgtcggcggg aatgggcgtc aaggtttttg cgctgcattg aaacgctgct 5461 atttcacatc tgagcaggga gagatccaat ggatgaagcc aaacagtgaa accggcaggt 5521 acaacatcaa cggaccaacc aacaccaaat tggaaccaag cattttccat gatgtgtttg 5581 aaggaaagaa agaaccagca gcactgtcat ctaaagataa gagactggaa gttgacttcg 5641 aagaagctct cttttccaag tacataggca acaagattca tgagcctgat gaatacatga 5701 ttcaagctgc ccatcactat gctaaccaac ttaaacagtt aaacattgat acatccagaa 5761 tgtccatggc tgatgcttgt tatggtactg acaacttgga agccatagat cttagcacta 5821 gcgctggata cccttacaat gctctaggta tcaggaaaag acaaattttg aacccagaaa 5881 cacgtgatgt gtccaagatg aaattttaca tggataagta tggtttggat ctgccctatt 5941 ctacctatgt gaaggatgaa ttaagaagca ttgagaaaat caagaaaggc aaatcacgct 6001 tgattgaggc aagtagtttg aatgactcag tctacactag aatgtgcttc ggacatctct 6061 ttgaaacctt ccatgctaat ccaggcacca ttactggatc tgctgtaggt tgtaacccag 6121 acaccttttg gagcaagatc cctatactct tgccaggatc tctttttgcc tttgattaca 6181 ctgcttacga tgcaagcttg agtcctgcat ggtttagagc cttggaaatc gtgcttaggg 6241 agttaggtta tgattctgaa gccatcaatg tcatcgaggg catcaaccat tcacaccaca 6301 tctacagaaa caaaacatac tgtgtgttgg gtggtatgcc atctggttgt tctgggacta 6361 gtatattcaa ttccatgatc aacaacatca tcataaggac cctgcttatt aagaccttca 6421 aggggattga tttagatgag ctctgcatga tttcctatgg tgatgatgtc ttggcaagtt 6481 accctttccc aattgattgt caggaattgg ctaatactgg aaaagagtat ggtttggtta 6541 tgaccccagc tgataagggc agctgtttca atgaagtgac ctgggaaaat gcaacttttc 6601 tgaagagagg attcaaacct gatgaacagt ttcctttcct tatccatcca acaatgccaa 6661 tgtcagaaat ccatgaatcc atcagatgga ctagggatgc acgaaacact caggatcacg 6721 ttcgctctct atgtctcctg gcgtggcaca acgggaagga aatttatgac caatttgtca 6781 agaaaattag atcagtgccc attggcttgg cactatccat accagagtac aacaatttgc 6841 gtaggctctg gttggaacaa ttttaaatga aaattaacat ctgaatttaa ttcggttaaa 6901 ttcggcc //