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Collection of commonly used RDP Tools for easy building
primer design pipeline
RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
A gene-targeted assembler tool
Scripts and resources for analyzing sequence data for select eco-functional genes
kbase app for rdp classifier
Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.
Java filtering framework for sequence data
Tools for kmer analysis.
Dynamic programming based frame shift detection and correction tool with nearest neighbor classification.
Tools for pairwise sequence comparison, distance calculation, and hidden markov model sequence scoring (using HMMER3 models). Many RDP Projects require this package.
RDP memory-constrained hierarchical clustering tools.
TaxonomyTree building and traversal utility classes.
K-mer based sequence matching tool
Tools for finding (and removing) DNA/RNA primers in sequence reads.
Java code for various ecological abundance statistics
Code samples from various languages for interacting with RDP soap services
Gene Family Classifier allows for fast and accurate classification of amplicon (or open reading frame) nucleotide sequences.