• Collection of commonly used RDP Tools for easy building

    Makefile 22 20 Updated Aug 2, 2018
  • primer design pipeline

    Java 3 GPL-3.0 Updated Jul 31, 2018
  • RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s

    Java 39 19 GPL-2.0 Updated May 3, 2018
  • A gene-targeted assembler tool

    Shell 10 4 Updated Oct 27, 2017
  • Scripts and resources for analyzing sequence data for select eco-functional genes

    Python 6 10 Updated May 25, 2017
  • kbase app for rdp classifier

    Updated Feb 9, 2017
  • Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.

    Java 1 3 GPL-3.0 Updated Jul 21, 2016
  • Java filtering framework for sequence data

    Java 1 GPL-3.0 Updated Jul 13, 2016
  • Tools for kmer analysis.

    Java 1 GPL-3.0 Updated Dec 22, 2015
  • Dynamic programming based frame shift detection and correction tool with nearest neighbor classification.

    Java 1 6 GPL-3.0 Updated Dec 22, 2015
  • Tools for pairwise sequence comparison, distance calculation, and hidden markov model sequence scoring (using HMMER3 models). Many RDP Projects require this package.

    Java 2 GPL-3.0 Updated Oct 30, 2015
  • RDP memory-constrained hierarchical clustering tools.

    Java 1 3 GPL-3.0 Updated May 21, 2015
  • Java 3 GPL-3.0 Updated Apr 24, 2015
  • TaxonomyTree building and traversal utility classes.

    Java 1 GPL-3.0 Updated Feb 24, 2015
  • K-mer based sequence matching tool

    Java 2 GPL-3.0 Updated Feb 11, 2015
  • Tools for finding (and removing) DNA/RNA primers in sequence reads.

    Java 1 GPL-3.0 Updated Jun 5, 2014
  • Java code for various ecological abundance statistics

    Java GPL-3.0 Updated May 27, 2014
  • FungeneUtils package

    Java Updated Jan 10, 2014
  • Code samples from various languages for interacting with RDP soap services

    Perl Updated Oct 24, 2012
  • Gene Family Classifier allows for fast and accurate classification of amplicon (or open reading frame) nucleotide sequences.

    JavaScript 2 GPL-3.0 Updated Aug 28, 2012