@rdpstaff

RDP Staff

Ribosomal Database Project at MSU

  • kbase app for rdp classifier

    Updated Feb 9, 2017
  • Java Updated Jan 10, 2017
  • Collection of commonly used RDP Tools for easy building

    Makefile 15 15 Updated Jul 21, 2016
  • Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.

    Java 1 1 Updated Jul 21, 2016
  • Java filtering framework for sequence data

    Java Updated Jul 13, 2016
  • Scripts and resources for analyzing sequence data for select eco-functional genes

    Python 5 5 Updated Feb 19, 2016
  • A gene-targeted assembler tool

    Shell 10 2 Updated Dec 22, 2015
  • Tools for kmer analysis.

    Java 1 Updated Dec 22, 2015
  • Dynamic programming based frame shift detection and correction tool with nearest neighbor classification.

    Java 1 5 Updated Dec 22, 2015
  • Tools for pairwise sequence comparison, distance calculation, and hidden markov model sequence scoring (using HMMER3 models). Many RDP Projects require this package.

    Java 1 1 Updated Oct 30, 2015
  • RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s

    Java 30 11 Updated Sep 15, 2015
  • RDP memory-constrained hierarchical clustering tools.

    Java 2 Updated May 21, 2015
  • Java 2 Updated Apr 24, 2015
  • TaxonomyTree building and traversal utility classes.

    Java 1 Updated Feb 24, 2015
  • K-mer based sequence matching tool

    Java 1 Updated Feb 11, 2015
  • Tools for finding (and removing) DNA/RNA primers in sequence reads.

    Java 1 Updated Jun 5, 2014
  • Java code for various ecological abundance statistics

    Java Updated May 27, 2014
  • FungeneUtils package

    Java Updated Jan 10, 2014
  • Code samples from various languages for interacting with RDP soap services

    Perl Updated Oct 24, 2012
  • Gene Family Classifier allows for fast and accurate classification of amplicon (or open reading frame) nucleotide sequences.

    JavaScript 2 Updated Aug 28, 2012