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A repository for the lessons and notebooks used for Binder tutorials
Models of the Microbial Pangenome
Visualizing Microbial Landscapes
metagenome assembly, binning, and visualization
Scripts for calculating features and regression of prokaryote OGT
This repository is for manage PATRIC static contents such as Website Tutorial, CLI Tutorial, User Guides, and PATRIC eNews.
Machine Learning in the Environmental Sciences
SEDNA: Spherical Exploration of Diversity using Nucleic Acid sequences
Analysis code for a manuscript on community similarity computation
R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding WITH SPHERICAL EMBEDDING
Doubly Stochastic Neighbor Embedding on Spheres
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
This is the repo for the Free Code Camp article, "How to build an image classifier with greater than 97% accuracy." Classifier utilizes Python, PyTorch, Numpy, Matplotlib, Seaborn, JSON, and PIL.
Automatically exported from code.google.com/p/seattlecrows
Sverdrup's 1953 Critical Depth Hypothesis
Teaching materials for the probabilistic graphical models and deep learning classes at Stanford
R scripts for real-time analysis of underway flow-through data aboard the USCGC Healy and other ships running MetAcq software
Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)
a web application to apply/develop analysis tools for Molecular and Clinical data
Data and images for communicating concepts in microbiology
Interactive analysis of metagenomics data
taxonomy R packages
Web content for Meren Lab