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branchr: R Estimation from Cluster Sizes

branchr implements estimations of reproduction numbers from cluster size distribution.

This project is currently in testing stage. Please contact the authors if you plan on using it.


To install the development version from github (requires Rtools on windows and GSL headers on all platforms):


To add local copies of the vignettes, you will need to specify:

devtools::install_github("reconhub/branchr", build_vignettes = TRUE)

Then, to load the package, use:



branchr is fully documented on a dedicated website.

It also comes with the following vignettes:

  • vignette 1: ...
  • vignette 2: ...


See details of contributions on:

Contributions are welcome via pull requests.

Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.

Maintainer: Pierre Nouvellet (

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