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Branch: develop
Commits on Mar 20, 2019
  1. Merge pull request #59 from jgarciamesa/bugfix/tribool

    reedacartwright committed Mar 20, 2019
    Use boost::optional instead of boost::tribool
Commits on Feb 6, 2019
Commits on Jan 29, 2019
  1. Clean and improve syntax

    jgarciamesa committed Jan 29, 2019
  2. Fix syntax using boost::optional

    jgarciamesa committed Jan 29, 2019
Commits on Jan 25, 2019
Commits on Feb 13, 2018
  1. Merge branch 'zmertens-specify_root_sequence' into develop

    reedacartwright committed Feb 13, 2018
Commits on Feb 12, 2018
Commits on Feb 9, 2018
  1. Update mitochondria trick to use vertebrate root code \

    zmertens committed Feb 9, 2018
    Add notes to error trick file \
    Add sections to rna trick
Commits on Feb 8, 2018
  1. Fix example tricks to use model parameters and inheritance correctly \

    zmertens committed Feb 8, 2018
    Fix aa, codon, and dna trick files to instantiate the models more correctly
  2. Fix move copy issue resulting from root params change \

    zmertens committed Feb 8, 2018
    In matic, the encoded root sequence has a temporary now
Commits on Feb 6, 2018
  1. Remove move copy in root \

    zmertens committed Feb 6, 2018
    Update table comment in residue create model function
  2. Remove unwanted files

    zmertens committed Feb 6, 2018
Commits on Feb 1, 2018
Commits on Jan 22, 2018
Commits on Jan 19, 2018
Commits on Jan 5, 2018
  1. - travis

    zmertens committed Jan 5, 2018
     - editorconfig
  2. Modify mitochondira dawg file to test different genetic code \

    zmertens committed Jan 5, 2018
    Remove resid header file since it wasnt being used \Moved comments from resid header file to residue header file
Commits on Dec 15, 2017
  1. Isolate RNA conversion problem \

    zmertens committed Dec 15, 2017
    when nuc_ variable is assigned \
    Cannot determine where the RNA mapping occurs though
Commits on Dec 7, 2017
  1. diff script up and running

    zmertens committed Dec 7, 2017
  2. Corrected six tricks except RNA example \

    zmertens committed Dec 7, 2017
    Add diff script to test validity of changes
Commits on Dec 6, 2017
  1. six tricks

    zmertens committed Dec 6, 2017
Commits on Nov 9, 2017
  1. Update encode routine for strings \

    zmertens committed Nov 9, 2017
    Use tripletToCodon func \
    Change iteration to go by threes \
    Remove redundant &s
Commits on Nov 8, 2017
Commits on Nov 4, 2017
Commits on Nov 3, 2017
Commits on Nov 2, 2017
  1. Fix typo in DawgDevel.cmake

    zmertens committed Nov 2, 2017
Commits on Nov 1, 2017
  1. Add triplet encoding for codon models \

    zmertens committed Nov 1, 2017
    Add error handling
Commits on Oct 28, 2017
  1. Add check to residue_exchange str decode \

    zmertens committed Oct 28, 2017
    Remove non-lating character
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