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Branch: develop
Commits on Mar 20, 2019
  1. Merge pull request #59 from jgarciamesa/bugfix/tribool

    reedacartwright committed Mar 20, 2019
    Use boost::optional instead of boost::tribool
Commits on Feb 6, 2019
Commits on Feb 13, 2018
  1. Merge branch 'zmertens-specify_root_sequence' into develop

    reedacartwright committed Feb 13, 2018
Commits on Feb 12, 2018
Commits on Jul 22, 2017
  1. Merge pull request #34 from zmertens/doxygen

    reedacartwright committed Jul 22, 2017
    Init doxygen and hook it into CMake
Commits on Dec 21, 2016
  1. Merge pull request #31 from zmertens/feature/devel

    reedacartwright committed Dec 21, 2016
    Add external project and development options
  2. Merge pull request #27 from zmertens/feature/gperftools

    reedacartwright committed Dec 21, 2016
    Add Gperftools
  3. Merge pull request #21 from zmertens/cleanup-and-cpp11

    reedacartwright committed Dec 21, 2016
    Clean up code, add more cpp11 features for performance
  4. Merge pull request #32 from zmertens/bugfix/unintialized_indel_params

    reedacartwright committed Dec 21, 2016
    ensure values are initialized
Commits on Dec 2, 2016
  1. Merge pull request #30 from zmertens/bugfix/alloc

    reedacartwright committed Dec 2, 2016
    Update dawgma.xmh
Commits on Sep 30, 2016
  1. Merge pull request #18 from zryan3/feature/coverage

    reedacartwright committed Sep 30, 2016
    Add coverage cmake file
  2. Merge pull request #20 from zryan3/update-cmake-version

    reedacartwright committed Sep 30, 2016
    Set lowest CMake version to 3.1.0
Commits on Sep 22, 2016
  1. Merge pull request #17 from zryan3/feature/cpp11

    reedacartwright committed Sep 22, 2016
    Add C++11 standard to CMake
Commits on Sep 12, 2016
  1. Merge pull request #13 from zryan3/dawg-7-update-help-trick

    reedacartwright committed Sep 12, 2016
    Update dawgma.xmh
Commits on Jul 29, 2016
  1. Merge pull request #9 from zryan3/dawg-7-zerorate

    reedacartwright committed Jul 29, 2016
    Add "zero" rate to the rate_model class
  2. Merge pull request #10 from zryan3/dawg-6-fix-examples

    reedacartwright committed Jul 29, 2016
    Fix two example dawg tricks from blowing up
Commits on Jul 13, 2016
  1. Merge pull request #3 from zryan3/Refactor-Dev

    reedacartwright committed Jul 13, 2016
    Small fixes to README
Commits on Mar 4, 2014
  1. changed label format to underscore

    reedacartwright committed Mar 4, 2014
    git-svn-id: svn://scit.us/dawg/current@771 7e5b8c5c-87e2-0310-a459-8d91125b37d5
Commits on Mar 3, 2014
  1. fixed runtime path setting

    reedacartwright committed Mar 3, 2014
    git-svn-id: svn://scit.us/dawg/current@770 7e5b8c5c-87e2-0310-a459-8d91125b37d5
Commits on Feb 18, 2014
  1. fix typo

    reedacartwright committed Feb 18, 2014
    git-svn-id: svn://scit.us/dawg/current@769 7e5b8c5c-87e2-0310-a459-8d91125b37d5
Commits on Aug 19, 2013
  1. add missing header

    reedacartwright committed Aug 19, 2013
    git-svn-id: svn://scit.us/dawg/current@767 7e5b8c5c-87e2-0310-a459-8d91125b37d5
  2. rate model is always discrete

    reedacartwright committed Aug 19, 2013
    git-svn-id: svn://scit.us/dawg/current@766 7e5b8c5c-87e2-0310-a459-8d91125b37d5
  3. silence warnings

    reedacartwright committed Aug 19, 2013
    git-svn-id: svn://scit.us/dawg/current@765 7e5b8c5c-87e2-0310-a459-8d91125b37d5
  4. silence compiler warning

    reedacartwright committed Aug 19, 2013
    git-svn-id: svn://scit.us/dawg/current@764 7e5b8c5c-87e2-0310-a459-8d91125b37d5
  5. update alias_table

    reedacartwright committed Aug 19, 2013
    git-svn-id: svn://scit.us/dawg/current@763 7e5b8c5c-87e2-0310-a459-8d91125b37d5
  6. new residue model

    reedacartwright committed Aug 19, 2013
    new residue exchange model
    user friendly lowercase/rna/etc.
    
    git-svn-id: svn://scit.us/dawg/current@762 7e5b8c5c-87e2-0310-a459-8d91125b37d5
  7. cleanup rate_model

    reedacartwright committed Aug 19, 2013
    save weights
    
    git-svn-id: svn://scit.us/dawg/current@761 7e5b8c5c-87e2-0310-a459-8d91125b37d5
  8. handle total indel rate being zero

    reedacartwright committed Aug 19, 2013
    git-svn-id: svn://scit.us/dawg/current@760 7e5b8c5c-87e2-0310-a459-8d91125b37d5
Commits on Aug 18, 2013
  1. speed tests

    reedacartwright committed Aug 18, 2013
    git-svn-id: svn://scit.us/dawg/current@755 7e5b8c5c-87e2-0310-a459-8d91125b37d5
Commits on Aug 17, 2013
  1. bug fix: keepempty=false with codon models

    reedacartwright committed Aug 17, 2013
    git-svn-id: svn://scit.us/dawg/current@743 7e5b8c5c-87e2-0310-a459-8d91125b37d5
  2. 256-tip tree test

    reedacartwright committed Aug 17, 2013
    git-svn-id: svn://scit.us/dawg/current@742 7e5b8c5c-87e2-0310-a459-8d91125b37d5
  3. bug fix

    reedacartwright committed Aug 17, 2013
    git-svn-id: svn://scit.us/dawg/current@741 7e5b8c5c-87e2-0310-a459-8d91125b37d5
Commits on Aug 16, 2013
  1. unirate branch work

    reedacartwright committed Aug 16, 2013
    git-svn-id: svn://scit.us/dawg/current@739 7e5b8c5c-87e2-0310-a459-8d91125b37d5
Commits on Aug 14, 2013
  1. added 'hashes' to trick object type

    reedacartwright committed Aug 14, 2013
    git-svn-id: svn://scit.us/dawg/current@737 7e5b8c5c-87e2-0310-a459-8d91125b37d5
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