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Python wrapper for Kubernetes which matches the interface of Docker
The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and …
Registry for Visualization Tool Annotations that are compatible with Refinery (https://github.com/refinery-platform/refinery-platform)
Wrap the Intervene shiny app for Refinery
Django app that manages the creation of, and proxies requests to, Docker containers.
Interactive visualizations for differential expression
Tries to load any file into a pandas DataFrame, with a minimum of configuration, and a focus on bioinformatics
A simple containerized Shiny App heatmap
Altair code for Refinery Stats plots.
Demonstrates how to wrap a Shiny app for Refinery
"Refinery-ified" flavor of the higlass-docker (https://github.com/hms-dbmi/higlass-docker/) project
A Docker container to wrap IGV.js
Builds a Refinery visualization Docker image for Lineup
Creates a Docker container wrapping a Refinery visualization for Qualimap in MultiQC
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.
A Galaxy: https://galaxyproject.org/ tool that takes an input Dataset Collection and returns two distinct outputs
SATORI - A System for Ontology-Guided Visual Exploration of Biomedical Data Repositories
A basic Refinery-compatible visualization tool to aid prospective Refinery VisualizationTool developers.
Get reference genomes from UCSC and prepare them for use by IGV.js
Galaxy tool wrapper around Clodius: https://github.com/hms-dbmi/clodius
"Refinery-ified" flavor of the base-notebook here: https://github.com/jupyter/docker-stacks
Ontology batch import definition files
Docker wrapper around heatmap-volcano-pca
Wrap IGV as an AMD which accepts Node IDs
Sample data sets and generators for Refinery.
Solr query parser plugin that performs proper query-time synonym expansion.
Refinery's Provenance Visualization
Most used topics