Pinned repositories

  1. refinery-platform

    The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data rep…

    JavaScript 89 20

  2. visualization-tools

    Registry for Visualization Tool Annotations that are compatible with Refinery (https://github.com/refinery-platform/refinery-platform)

    Python 1 1

  3. django_docker_engine

    Django app that manages the creation of, and proxies requests to, Docker containers.

    Python 3

  • Python wrapper for Kubernetes which matches the interface of Docker

    Python MIT Updated Oct 16, 2018
  • The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and …

    JavaScript 89 20 Updated Oct 16, 2018
  • Registry for Visualization Tool Annotations that are compatible with Refinery (https://github.com/refinery-platform/refinery-platform)

    Python 1 1 MIT Updated Oct 2, 2018
  • Wrap the Intervene shiny app for Refinery

    R Updated Oct 2, 2018
  • Django app that manages the creation of, and proxies requests to, Docker containers.

    Python 3 MIT Updated Sep 27, 2018
  • Interactive visualizations for differential expression

    Python 18 1 MIT Updated Sep 22, 2018
  • R 4 Updated Sep 12, 2018
  • Tries to load any file into a pandas DataFrame, with a minimum of configuration, and a focus on bioinformatics

    Python MIT Updated Sep 11, 2018
  • A simple containerized Shiny App heatmap

    Shell MIT Updated Sep 6, 2018
  • Altair code for Refinery Stats plots.

    Jupyter Notebook MIT Updated Sep 6, 2018
  • Demonstrates how to wrap a Shiny app for Refinery

    Shell MIT Updated Sep 6, 2018
  • "Refinery-ified" flavor of the higlass-docker (https://github.com/hms-dbmi/higlass-docker/) project

    Python MIT Updated Aug 23, 2018
  • A Docker container to wrap IGV.js

    Python MIT Updated Aug 13, 2018
  • Builds a Refinery visualization Docker image for Lineup

    Python MIT Updated Aug 1, 2018
  • Creates a Docker container wrapping a Refinery visualization for Qualimap in MultiQC

    Shell MIT Updated Jul 31, 2018
  • Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.

    Python 1 GPL-3.0 Updated Jul 30, 2018
  • A Galaxy: https://galaxyproject.org/ tool that takes an input Dataset Collection and returns two distinct outputs

    MIT Updated Jul 10, 2018
  • SATORI - A System for Ontology-Guided Visual Exploration of Biomedical Data Repositories

    CSS 1 Updated Apr 9, 2018
  • A basic Refinery-compatible visualization tool to aid prospective Refinery VisualizationTool developers.

    Python MIT Updated Mar 22, 2018
  • Get reference genomes from UCSC and prepare them for use by IGV.js

    Python MIT Updated Oct 26, 2017
  • Galaxy tool wrapper around Clodius: https://github.com/hms-dbmi/clodius

    MIT Updated Oct 18, 2017
  • "Refinery-ified" flavor of the base-notebook here: https://github.com/jupyter/docker-stacks

    Python MIT Updated Jul 6, 2017
  • Ontology batch import definition files

    Web Ontology Language 2 1 MIT Updated May 3, 2017
  • JavaScript 1 BSD-3-Clause Updated Mar 23, 2017
  • Docker wrapper around heatmap-volcano-pca

    Python MIT Updated Mar 23, 2017
  • Jupyter Notebook Updated Feb 14, 2017
  • Wrap IGV as an AMD which accepts Node IDs

    JavaScript MIT Updated Jan 5, 2017
  • Sample data sets and generators for Refinery.

    Python 3 MIT Updated May 3, 2016
  • Solr query parser plugin that performs proper query-time synonym expansion.

    Java Updated Apr 15, 2016
  • Refinery's Provenance Visualization

    JavaScript Updated Apr 14, 2016
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