g++-8 -Wall -O3 -m64 -std=c++14 -fopenmp -pthread -mavx -I src/kmc_api -I "" -c src/kmer_db.cpp -o src/kmer_db.o
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h: In constructor 'pattern_t::pattern_t()':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h: In constructor 'pattern_t::pattern_t(sample_id_t, uint64_t)':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h: In constructor 'pattern_t::pattern_t(pattern_t&, int64_t, sample_id_t, uint64_t)':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/kmer_db.cpp:28:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
src/kmer_db.cpp: In lambda function:
src/kmer_db.cpp:161:42: warning: comparison of integer expressions of different signedness: 'int64_t' {aka 'long long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
       if (patterns[p_id].get_num_kmers() == pid_count && !patterns[p_id].get_is_parrent()) {
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
src/kmer_db.cpp: In member function 'virtual sample_id_t FastKmerDb::addKmers(std::__cxx11::string, const std::vector<long long unsigned int>&, uint32_t, double)':
src/kmer_db.cpp:268:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  for (int j = 0; j < n_kmers_to_add; ++j)
                  ~~^~~~~~~~~~~~~~~~
src/kmer_db.cpp:344:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::thread>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  for (int tid = 0; tid < threads.size(); ++tid) {
                    ~~~~^~~~~~~~~~~~~~~~
src/kmer_db.cpp:357:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::thread>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  for (int tid = 0; tid < threads.size(); ++tid) {
                    ~~~~^~~~~~~~~~~~~~~~
src/kmer_db.cpp: In member function 'virtual void FastKmerDb::serialize(std::ofstream&) const':
src/kmer_db.cpp:392:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  for (int i = 0; i < sampleNames.size(); ++i) {
                  ~~^~~~~~~~~~~~~~~~~~~~
src/kmer_db.cpp:429:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<pattern_t>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  for (int pid = 0; pid < patterns.size(); ++pid) {
                    ~~~~^~~~~~~~~~~~~~~~~
src/kmer_db.cpp: In member function 'virtual bool FastKmerDb::deserialize(std::ifstream&)':
src/kmer_db.cpp:469:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  for (int i = 0; i < sampleNames.size(); ++i) {
                  ~~^~~~~~~~~~~~~~~~~~~~
src/kmer_db.cpp: In member function 'virtual void FastKmerDb::savePatterns(std::ofstream&) const':
src/kmer_db.cpp:542:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<pattern_t>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  for (int i = 0; i < patterns.size(); ++i) {
                  ~~^~~~~~~~~~~~~~~~~
src/kmer_db.cpp: In lambda function:
src/kmer_db.cpp:719:47: warning: comparison of integer expressions of different signedness: 'int' and '__gnu_cxx::__alloc_traits<std::allocator<long unsigned int>, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare]
      for (int id = workerRanges[range_id]; id < workerRanges[range_id + 1]; ) {
src/kmer_db.cpp:722:17: warning: comparison of integer expressions of different signedness: 'int' and '__gnu_cxx::__alloc_traits<std::allocator<long unsigned int>, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare]
       while (id < workerRanges[range_id + 1] && get<0>(sample2pattern[id]) == Si) {
src/kmer_db.cpp:722:76: warning: comparison of integer expressions of different signedness: 'std::__tuple_element_t<0, std::tuple<unsigned int, unsigned int, unsigned int> >' {aka 'unsigned int'} and 'int' [-Wsign-compare]
       while (id < workerRanges[range_id + 1] && get<0>(sample2pattern[id]) == Si) {
                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
src/kmer_db.cpp: In member function 'virtual void FastKmerDb::calculateSimilarity(LowerTriangularMatrix<unsigned int>&)':
src/kmer_db.cpp:794:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<pattern_t>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  for (int pid = 0; pid < patterns.size(); ) {
                    ~~~~^~~~~~~~~~~~~~~~~
src/kmer_db.cpp:815:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<pattern_t>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   while (pid < patterns.size() && samplesCount + patterns[pid].get_num_samples() < bufsize && part_id < no_hist_parts) {
          ~~~~^~~~~~~~~~~~~~~~~
src/kmer_db.cpp:818:21: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
    if (samplesCount >= next_boundary)
        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
src/kmer_db.cpp:837:7: warning: unused variable 'last_pid' [-Wunused-variable]
   int last_pid = pid;
       ^~~~~~~~
src/kmer_db.cpp:838:7: warning: unused variable 'num_samples' [-Wunused-variable]
   int num_samples = getSamplesCount();
       ^~~~~~~~~~~
src/kmer_db.cpp:839:9: warning: unused variable 'sum_hist_sample_ids' [-Wunused-variable]
   auto &sum_hist_sample_ids = hist_sample_ids[num_threads];
         ^~~~~~~~~~~~~~~~~~~
src/kmer_db.cpp:562:12: warning: variable 'currentPtr' set but not used [-Wunused-but-set-variable]
  uint32_t* currentPtr;
            ^~~~~~~~~~
src/kmer_db.cpp: In lambda function:
src/kmer_db.cpp:998:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
    for (int id = lo; id < hi; ++id) {
                      ~~~^~~~
src/kmer_db.cpp:999:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
     if (id + 1 < hi)
         ~~~~~~~^~~~
src/kmer_db.cpp:993:11: warning: unused variable 'block_size' [-Wunused-variable]
    size_t block_size = n_patterns / num_threads;
           ^~~~~~~~~~
In file included from src/kmer_db.h:14,
                 from src/kmer_db.cpp:28:
src/aligned_vector.h: In instantiation of 'aligned_vector<T, ALIGNMENT>::aligned_vector(size_t) [with T = std::pair<long long int, long long int*>; unsigned int ALIGNMENT = 4096; size_t = long unsigned int]':
src/kmer_db.cpp:56:29:   required from here
src/aligned_vector.h:16:9: warning: 'aligned_vector<std::pair<long long int, long long int*> >::data_size' will be initialized after [-Wreorder]
  size_t data_size;
         ^~~~~~~~~
src/aligned_vector.h:14:5: warning:   'std::pair<long long int, long long int*>* aligned_vector<std::pair<long long int, long long int*> >::data_aligned' [-Wreorder]
  T *data_aligned;
     ^~~~~~~~~~~~
src/aligned_vector.h:54:2: warning:   when initialized here [-Wreorder]
  aligned_vector(size_t _data_size = 0) : data_size(_data_size), data_aligned(nullptr), data_raw(nullptr)
  ^~~~~~~~~~~~~~
g++-8 -Wall -O3 -m64 -std=c++14 -fopenmp -pthread -mavx -I src/kmc_api -I "" -c src/console.cpp -o src/console.o
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h: In constructor 'pattern_t::pattern_t()':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h: In constructor 'pattern_t::pattern_t(sample_id_t, uint64_t)':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h: In constructor 'pattern_t::pattern_t(pattern_t&, int64_t, sample_id_t, uint64_t)':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
src/console.cpp: In function 'void show_progress(const AbstractKmerDb&)':
src/console.cpp:34:9: warning: unused variable 'tot_pat_size' [-Wunused-variable]
  size_t tot_pat_size = 0;
         ^~~~~~~~~~~~
src/console.cpp:35:9: warning: unused variable 'num_calc' [-Wunused-variable]
  size_t num_calc = 0;
         ^~~~~~~~
src/console.cpp: In member function 'int Console::runBuildDatabase(const string&, std::__cxx11::string, InputFile::Format, double, uint32_t)':
src/console.cpp:276:9: warning: deleting object of polymorphic class type 'FastKmerDb' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
  delete db;
         ^~
src/console.cpp: In member function 'int Console::runAllVsAll(const string&, const string&)':
src/console.cpp:326:9: warning: deleting object of polymorphic class type 'FastKmerDb' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
  delete db;
         ^~
src/console.cpp: In member function 'int Console::runDistanceCalculation(const string&)':
src/console.cpp:433:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::basic_ofstream<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  for (int i = 0; i < files.size(); ++i) {
                  ~~^~~~~~~~~~~~~~
src/console.cpp:472:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::function<double(long unsigned int, long unsigned int, long unsigned int, int)> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
    for (int i = 0; i < metrics.size(); ++i) {
                    ~~^~~~~~~~~~~~~~~~
In file included from src/kmer_db.h:12,
                 from src/kmc_file_wrapper.h:11,
                 from src/console.h:10,
                 from src/console.cpp:21:
src/array.h: In instantiation of 'void LowerTriangularMatrix<T>::save(std::ofstream&) [with T = unsigned int; std::ofstream = std::basic_ofstream<char>]':
src/console.cpp:320:17:   required from here
src/array.h:159:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
   for (int i = 0; i < size; ++i) {
                   ~~^~~~~~
src/array.h:164:22: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
    for (int j = i; j < size; ++j) {
                    ~~^~~~~~
src/console.cpp:406:22: warning: control reaches end of non-void function [-Wreturn-type]
  std::vector<size_t> kmersCount;
                      ^~~~~~~~~~
g++-8 -Wall -O3 -m64 -std=c++14 -fopenmp -pthread -mavx -I src/kmc_api -I "" -c src/instrset_detect.cpp -o src/instrset_detect.o
g++-8 -Wall -O3 -m64 -std=c++14 -fopenmp -pthread -mavx -I src/kmc_api -I "" -c src/loader.cpp -o src/loader.o
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h: In constructor 'pattern_t::pattern_t()':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h: In constructor 'pattern_t::pattern_t(sample_id_t, uint64_t)':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h: In constructor 'pattern_t::pattern_t(pattern_t&, int64_t, sample_id_t, uint64_t)':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/loader.h:10,
                 from src/loader.cpp:9:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/loader.cpp:9:
src/loader.h: In constructor 'Loader::Loader(std::shared_ptr<MinHashFilter>, InputFile::Format, int)':
src/loader.h:104:43: warning: 'Loader::intermediateQueue' will be initialized after [-Wreorder]
  CRegisteringQueue<std::shared_ptr<Task>> intermediateQueue;
                                           ^~~~~~~~~~~~~~~~~
src/loader.h:100:43: warning:   'CRegisteringQueue<std::shared_ptr<Task> > Loader::readerQueue' [-Wreorder]
  CRegisteringQueue<std::shared_ptr<Task>> readerQueue;
                                           ^~~~~~~~~~~
src/loader.cpp:19:1: warning:   when initialized here [-Wreorder]
 Loader::Loader(std::shared_ptr<MinHashFilter> filter, InputFile::Format inputFormat, int _num_threads) :
 ^~~~~~
In file included from src/loader.cpp:9:
src/loader.h:100:43: warning: 'Loader::readerQueue' will be initialized after [-Wreorder]
  CRegisteringQueue<std::shared_ptr<Task>> readerQueue;
                                           ^~~~~~~~~~~
src/loader.h:82:9: warning:   'size_t Loader::currentFileId' [-Wreorder]
  size_t currentFileId;
         ^~~~~~~~~~~~~
src/loader.cpp:19:1: warning:   when initialized here [-Wreorder]
 Loader::Loader(std::shared_ptr<MinHashFilter> filter, InputFile::Format inputFormat, int _num_threads) :
 ^~~~~~
In file included from src/loader.cpp:9:
src/loader.h:84:6: warning: 'Loader::numThreads' will be initialized after [-Wreorder]
  int numThreads;
      ^~~~~~~~~~
src/loader.h:78:20: warning:   'InputFile::Format Loader::inputFormat' [-Wreorder]
  InputFile::Format inputFormat;
                    ^~~~~~~~~~~
src/loader.cpp:19:1: warning:   when initialized here [-Wreorder]
 Loader::Loader(std::shared_ptr<MinHashFilter> filter, InputFile::Format inputFormat, int _num_threads) :
 ^~~~~~
g++-8 -Wall -O3 -m64 -std=c++14 -fopenmp -pthread -mavx -I src/kmc_api -I "" -c src/log.cpp -o src/log.o
g++-8 -Wall -O3 -m64 -std=c++14 -fopenmp -pthread -mavx -I src/kmc_api -I "" -c src/main.cpp -o src/main.o
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h: In constructor 'pattern_t::pattern_t()':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h: In constructor 'pattern_t::pattern_t(sample_id_t, uint64_t)':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h: In constructor 'pattern_t::pattern_t(pattern_t&, int64_t, sample_id_t, uint64_t)':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/main.cpp:9:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
g++-8 -O3 -mavx -m64 -std=c++14 -pthread -fopenmp -c src/parallel_sorter.cpp -o src/parallel_sorter.o
g++-8 -Wall -O3 -m64 -std=c++14 -fopenmp -pthread -mavx -I src/kmc_api -I "" -c src/pattern.cpp -o src/pattern.o
In file included from src/pattern.cpp:9:
src/pattern.h: In constructor 'pattern_t::pattern_t()':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/pattern.cpp:9:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h: In constructor 'pattern_t::pattern_t(sample_id_t, uint64_t)':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/pattern.cpp:9:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h: In constructor 'pattern_t::pattern_t(pattern_t&, int64_t, sample_id_t, uint64_t)':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/pattern.cpp:9:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/pattern.cpp:9:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
g++-8 -Wall -O3 -m64 -std=c++14 -fopenmp -pthread -mavx -I src/kmc_api -I "" -c src/kmc_file_wrapper.cpp -o src/kmc_file_wrapper.o
src/kmc_file_wrapper.cpp:3:9: warning: #pragma once in main file
 #pragma once
         ^~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h: In constructor 'pattern_t::pattern_t()':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:93:2: warning:   when initialized here [-Wreorder]
  pattern_t() :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h: In constructor 'pattern_t::pattern_t(sample_id_t, uint64_t)':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:102:2: warning:   when initialized here [-Wreorder]
  pattern_t(sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h: In constructor 'pattern_t::pattern_t(pattern_t&, int64_t, sample_id_t, uint64_t)':
src/pattern.h:31:14: warning: 'pattern_t::last_sample_id' will be initialized after [-Wreorder]
  sample_id_t last_sample_id;
              ^~~~~~~~~~~~~~
src/pattern.h:25:10: warning:   'int64_t pattern_t::parent_id' [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:25:10: warning: 'pattern_t::parent_id' will be initialized after [-Wreorder]
  int64_t parent_id;    // parrent pattern id
          ^~~~~~~~~
src/pattern.h:24:10: warning:   'int64_t pattern_t::num_kmers' [-Wreorder]
  int64_t num_kmers;   // number of kmers with this pattern
          ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:32:11: warning: 'pattern_t::num_bits' will be initialized after [-Wreorder]
  uint32_t num_bits;
           ^~~~~~~~
src/pattern.h:27:12: warning:   'uint64_t* pattern_t::data' [-Wreorder]
  uint64_t* data;     // tablica id próbek
            ^~~~
In file included from src/kmer_db.h:10,
                 from src/kmc_file_wrapper.h:11,
                 from src/kmc_file_wrapper.cpp:1:
src/pattern.h:112:2: warning:   when initialized here [-Wreorder]
  pattern_t(pattern_t &v, int64_t parent_id, sample_id_t x, uint64_t num_kmers) :
  ^~~~~~~~~
src/kmc_file_wrapper.cpp: In member function 'virtual bool GenomeInputFile::load(std::vector<long long unsigned int>&, uint32_t&, double&)':
src/kmc_file_wrapper.cpp:92:10: warning: statement has no effect [-Wunused-value]
      ret == Z_STREAM_END;
          ^
src/kmc_file_wrapper.cpp:126:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   while (header = strchr(ptr, '>')) { // find begining of header
          ~~~~~~~^~~~~~~~~~~~~~~~~~
src/kmc_file_wrapper.cpp:142:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<char*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   for (int i = 0; i < chromosomes.size(); ++i) {
                   ~~^~~~~~~~~~~~~~~~~~~~
src/kmc_file_wrapper.cpp:203:27: warning: array subscript has type 'char' [-Wchar-subscripts]
     char symb = map[seq[i]];
                           ^
src/kmc_file_wrapper.cpp:215:27: warning: array subscript has type 'char' [-Wchar-subscripts]
     char symb = map[seq[i]];
                           ^
src/kmc_file_wrapper.cpp:171:10: warning: unused variable 'total_kmers' [-Wunused-variable]
   size_t total_kmers = 0;
          ^~~~~~~~~~~
src/kmc_file_wrapper.cpp:180:10: warning: unused variable 'kmersCount' [-Wunused-variable]
   size_t kmersCount = 0;
          ^~~~~~~~~~
src/kmc_file_wrapper.cpp: In member function 'virtual bool KmcInputFile::load(std::vector<long long unsigned int>&, uint32_t&, double&)':
src/kmc_file_wrapper.cpp:336:9: warning: unused variable 'passed' [-Wunused-variable]
  size_t passed = 0;
         ^~~~~~
g++-8 -Wall -O3 -m64 -std=c++14 -fopenmp -pthread -mavx -I src/kmc_api -I "" -c src/kmc_api/kmc_file.cpp -o src/kmc_api/kmc_file.o
src/kmc_api/kmc_file.cpp: In member function 'bool CKMCFile::BinarySearch(int64, int64, const CKmerAPI&, uint64&, uint32)':
src/kmc_api/kmc_file.cpp:1359:18: warning: comparison of integer expressions of different signedness: 'int64' {aka 'long long int'} and 'uint64' {aka 'long long unsigned int'} [-Wsign-compare]
  if (index_start >= total_kmers)
      ~~~~~~~~~~~~^~~~~~~~~~~~~~
g++-8 -Wall -O3 -m64 -std=c++14 -fopenmp -pthread -mavx -I src/kmc_api -I "" -c src/kmc_api/kmer_api.cpp -o src/kmc_api/kmer_api.o
g++-8 -Wall -O3 -m64 -std=c++14 -fopenmp -pthread -mavx -I src/kmc_api -I "" -c src/kmc_api/mmer.cpp -o src/kmc_api/mmer.o
g++-8 -Wall -O3 -m64 -std=c++14 -fopenmp -pthread -mavx -I src/kmc_api -I "" -c src/row_add_avx.cpp -o src/row_add_avx.o
src/row_add_avx.cpp: In function 'void row_add_avx(uint32_t*, uint32_t*, uint32_t, uint32_t)':
src/row_add_avx.cpp:37:21: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
  for (j = 0; j + 32 <= num_elems; j += 32)
              ~~~~~~~^~~~~~~~~~~~
g++-8 -Wall -O3 -m64 -std=c++14 -fopenmp -pthread -mavx2 -I src/kmc_api -I "" -c src/row_add_avx2.cpp -o src/row_add_avx2.o
src/row_add_avx2.cpp: In function 'void row_add_avx2(uint32_t*, uint32_t*, uint32_t, uint32_t)':
src/row_add_avx2.cpp:41:21: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
  for (j = 0; j + 32 <= num_elems; j += 32)
              ~~~~~~~^~~~~~~~~~~~
g++-8 -lm -O3 -std=c++14 -lpthread -fopenmp -mavx -fabi-version=6  -o ./kmer-db src/kmer_db.o src/console.o src/instrset_detect.o src/loader.o src/log.o src/main.o src/parallel_sorter.o src/pattern.o src/kmc_file_wrapper.o src/kmc_api/kmc_file.o src/kmc_api/kmer_api.o src/kmc_api/mmer.o  src/row_add_avx.o src/row_add_avx2.o  -lz