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README.md

Singularity

Collection of Singularity recipes

How to create a Singularity image

There is not a lot of space in the default directory (/tmp), so this is just a temporary workaround

export SINGULARITY_TMPDIR=/var/tmp/singularity

Set the proxy

export http_proxy=http://USER:PW@ep-proxy.bportugal.pt:8080
export https_proxy=http://USER:PW@ep-proxy.bportugal.pt:8080

Replace

USER: your email and PW: your password

Build the image

singularity build --fakeroot image_name.sif image_recipe

Launch the container

singularity shell image_name.sif

Launch the container with write permissions

See: Build a container

singularity build --fakeroot --sandbox container container.sif
singularity shell --writable container/

LINK: <<>> NOTE::the repository must be public <<>>

Binder

OTHER LINKS

https://mybinder.org/v2/gh/betatim/r-conda/master?urlpath=rstudio

https://github.com/BPLIM/Singularity/master?urlpath=rstudio

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