From aa21465a12fd1e20aba2c605b28a609c18935383 Mon Sep 17 00:00:00 2001
From: Benjamin Redelings <benjamin.redelings@gmail.com>
Date: Thu, 29 May 2025 16:28:33 -0400
Subject: [PATCH] Run tests that the biogeo tutorials work

---
 tutorials/biogeo/tests.txt      | 5 +++++
 tutorials/run_tutorial_tests.sh | 7 ++++++-
 2 files changed, 11 insertions(+), 1 deletion(-)
 create mode 100644 tutorials/biogeo/tests.txt

diff --git a/tutorials/biogeo/tests.txt b/tutorials/biogeo/tests.txt
new file mode 100644
index 00000000..7d6279fc
--- /dev/null
+++ b/tutorials/biogeo/tests.txt
@@ -0,0 +1,5 @@
+run_simple.Rev
+run_simple_phy.Rev
+run_epoch.Rev
+run_epoch_phy.Rev
+mcmc_primates_bg_simple.Rev
diff --git a/tutorials/run_tutorial_tests.sh b/tutorials/run_tutorial_tests.sh
index 84b46c92..9fa8f8b7 100755
--- a/tutorials/run_tutorial_tests.sh
+++ b/tutorials/run_tutorial_tests.sh
@@ -62,7 +62,12 @@ for t in */tests.txt; do
     do
         (
         cd scripts
-        sed 's/generations=[0-9]*/generations=1/g' "$script" | sed 's/checkpointInterval=[0-9]*/checkpointInterval=1/g'  > "cp_$script"
+        cat "$script" |
+            sed 's/generations=[0-9]*/generations=1/g' |
+            sed 's/^n_gen *= *[0-9]*/n_gen = 1/' |
+            sed 's/\.burnin([0-9][0-9]*/.burnin(1/' |
+            sed 's/\.run([0-9][0-9]*/.run(1/' |
+            sed 's/checkpointInterval=[0-9]*/checkpointInterval=1/g'  > "cp_$script"
         )
         ${rb_exec} -b scripts/cp_$script
         res="$?"