Julia for Whole-genome Analysis Software
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README.md

JWAS.jl

Build Status

JWAS.jl is an open-source software tool written in Julia for Bayesian multiple regression methods applied to genome-wide association studies and genomic prediction.

Structure of JWAS Module

JWAS.jl

├────── build_model
├────── set_covariate
├────── set_random
├────── get_pedigree
├────── add_genotypes
├────── outputMCMCsamples
├────── showMME
├────── solve
└────── runMCMC

├──────── PedModule.jl

├──────── Datasets.jl

├──────── SSBR.jl

├──────── misc.jl
           ├── get_breeding_values
           ├── get_additive_genetic_variances
           ├── get_heritability
           ├── get_correlations
           └── report


Help

  1. Show this README file in REPL or notebook using ?JWAS
  2. For help on a specific function above, type ? followed by its name, e.g. ?runMCMC and press enter.
  3. Run Pkg.checkout("JWAS") to get the newest unofficial JWAS. Run Pkg.free("JWAS") to go back to the offical one.