Skip to content
Permalink
Browse files

Update README.md

  • Loading branch information...
reyesaldasoro committed Sep 9, 2019
1 parent b1fe2e7 commit e5665b8fd1bbe3d8592ca7559e12eca0c37e90bd
Showing with 6 additions and 9 deletions.
  1. +6 −9 README.md
@@ -30,35 +30,32 @@ quantitative measurements related to their images.</p>

<p>With time, it become evident that it was better to disseminate the algorithms as Matlab Scripts to be run locally instead of cloud-based. The algorithms available at CAIMAN can now be accessed in GitHub: </p>

* <b>shading correction </b>based on a signal envelope estimation retrospective algorithm,
* <b>shading correction </b>based on a signal envelope estimation retrospective algorithm,

https://github.com/reyesaldasoro/shading-correction

<img style="width: 449px; height: 208px;" alt="Shading Correction" src="shading.jpg"></td>
<img style="width: 449px; height: 208px;" alt="Shading Correction" src="Figures/shading.jpg"></td>

* <b>measuring cellular migration</b> for scratch wound assays

https://github.com/reyesaldasoro/Cell-Migration

<img style="width: 180px; height: 464px;" alt="Migration measurement" src="migration.jpg" rotate="90"><br>
<img style="width: 180px; height: 464px;" alt="Migration measurement" src="Figures/migration.jpg" rotate="90"><br>

* <b>Microvessel Segmentation</b> from tissue stained with immunohistochemistry (CD-31, blue-brown)

https://github.com/reyesaldasoro/Microvessel-Segmentation

<img style="width: 449px; height: 208px;" alt="Chromatic Analysis" src="Figure6CD31.jpg"></td>
<img style="width: 449px; height: 208px;" alt="Chromatic Analysis" src="Figures/Figure6CD31.jpg"></td>

* <b>Tracing of vessels</b> for in-vivo intravital microscopy

https://github.com/reyesaldasoro/Scale-Space-Vessel-Tracing

<img style="width: 449px; height: 208px;" alt="Chromatic Analysis" src="tracing2.png"></td>
<img style="width: 449px; height: 208px;" alt="Chromatic Analysis" src="Figures/tracing2.png"></td>

* <b>Chromatic Analysis</b> originally for immunohistochemistry and intravital microscopy, but can be used for anything

https://github.com/reyesaldasoro/Chromatic-Analysis

<img style="width: 449px; height: 208px;" alt="Chromatic Analysis" src="chromaticity.jpg"></td>



<img style="width: 449px; height: 208px;" alt="Chromatic Analysis" src="Figures/chromaticity.jpg"></td>

0 comments on commit e5665b8

Please sign in to comment.
You can’t perform that action at this time.